diff --git a/indication_paths.json b/indication_paths.json index 8c8cacc13..de0051d44 100644 --- a/indication_paths.json +++ b/indication_paths.json @@ -102795,7 +102795,6 @@ ] }, { - "comments": "MESH:C000608451 may have been deprecated; no longer in MESH.", "directed": true, "graph": { "_id": "DB09087_MESH_D010437_1", @@ -102807,24 +102806,14 @@ }, "links": [ { - "key": "subclass of", - "source": "MESH:D000534", - "target": "MESH:D000891" - }, - { - "key": "subclass of", + "key": "negatively regulates", "source": "MESH:D000534", - "target": "MESH:D001252" - }, - { - "key": "negatively correlated with", - "source": "MESH:D000891", "target": "GO:0006954" }, { - "key": "negatively correlated with", - "source": "MESH:D001252", - "target": "MESH:D005744" + "key": "negatively regulates", + "source": "MESH:D000534", + "target": "GO:0001696" }, { "key": "positively correlated with", @@ -102833,7 +102822,7 @@ }, { "key": "positively correlated with", - "source": "MESH:D005744", + "source": "GO:0001696", "target": "MESH:D010437" } ], @@ -102848,19 +102837,9 @@ "name": "alum" }, { - "id": "MESH:D000891", - "label": "ChemicalSubstance", - "name": "Anti-Infective Agents, Local" - }, - { - "id": "MESH:D001252", - "label": "ChemicalSubstance", - "name": "Astringents" - }, - { - "id": "MESH:D005744", - "label": "ChemicalSubstance", - "name": "Gastric Acid" + "id": "GO:0001696", + "label": "BiologicalProcess", + "name": "gastric acid secretion" }, { "id": "GO:0006954", @@ -102879,7 +102858,7 @@ ] }, { - "comments": "MESH:C000608451 may have been deprecated; no longer in MESH. The disease is denotated as Indigestion in the original file before curation. Note that the majority of cases no cause can be attributed to leading to the disease. When a cause can indeed be determined, the majority of cases will be due to gastroesophageal reflux and gastritis (https://en.wikipedia.org/wiki/Indigestion#Cause).", + "comment": "The disease is also known as Indigestion as per in the original file before curation. Note that in the majority of cases no cause can be attributed to leading to the disease. When a cause can indeed be determined, the majority of cases will be due to gastroesophageal reflux and gastritis (https://en.wikipedia.org/wiki/Indigestion#Cause).", "directed": true, "graph": { "_id": "DB09087_MESH_D004415_1", @@ -102891,24 +102870,14 @@ }, "links": [ { - "key": "subclass of", - "source": "MESH:D000534", - "target": "MESH:D000891" - }, - { - "key": "subclass of", + "key": "negatively regulates", "source": "MESH:D000534", - "target": "MESH:D001252" - }, - { - "key": "negatively correlated with", - "source": "MESH:D000891", "target": "GO:0006954" }, { - "key": "negatively correlated with", - "source": "MESH:D001252", - "target": "MESH:D005744" + "key": "negatively regulates", + "source": "MESH:D000534", + "target": "GO:0001696" }, { "key": "positively correlated with", @@ -102917,16 +102886,16 @@ }, { "key": "positively correlated with", - "source": "MESH:D005744", + "source": "GO:0001696", "target": "HP:0002020" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0002020", "target": "MESH:D004415" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0005263", "target": "MESH:D004415" } @@ -102942,19 +102911,9 @@ "name": "alum" }, { - "id": "MESH:D000891", - "label": "ChemicalSubstance", - "name": "Anti-Infective Agents, Local" - }, - { - "id": "MESH:D001252", - "label": "ChemicalSubstance", - "name": "Astringents" - }, - { - "id": "MESH:D005744", - "label": "ChemicalSubstance", - "name": "Gastric Acid" + "id": "GO:0001696", + "label": "BiologicalProcess", + "name": "gastric acid secretion" }, { "id": "HP:0005263", @@ -103131,7 +103090,7 @@ ] }, { - "comments": "Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x).", + "comment": "Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x).", "directed": true, "graph": { "_id": "DB00736_MESH_D005764_1", @@ -103218,7 +103177,7 @@ ] }, { - "comments": "Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). This disease is denoted as Peptic reflux disease in the original file.", + "comment": "Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). This disease is denoted as Peptic reflux disease in the original file.", "directed": true, "graph": { "_id": "DB00736_MESH_D004942_1", @@ -103255,7 +103214,7 @@ "target": "HP:0002020" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0004791", "target": "MESH:D004942" }, @@ -103312,7 +103271,7 @@ ] }, { - "comments": "Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). This disease is denoted as Peptic reflux disease in the original file.", + "comment": "Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). This disease is denoted as Peptic reflux disease in the original file.", "directed": true, "graph": { "_id": "DB00736_MESH_D015043_1", @@ -103349,12 +103308,12 @@ "target": "HP:0002588" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0002588", "target": "MESH:D015043" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0004398", "target": "MESH:D015043" } @@ -103408,7 +103367,7 @@ ] }, { - "comments": "Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). This disease is denoted as Peptic reflux disease in the original file.", + "comment": "Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). This disease is denoted as Peptic reflux disease in the original file.", "directed": true, "graph": { "_id": "DB00736_MESH_D010437_1", @@ -103471,11 +103430,7 @@ "reference": [ "https://go.drugbank.com/drugs/DB00736#mechanism-of-action", "https://en.wikipedia.org/wiki/Esomeprazole", - "https://en.wikipedia.org/wiki/Omeprazole#Mechanism_of_action", - "https://en.wikipedia.org/wiki/Esophagitis#Causes", - "https://en.wikipedia.org/wiki/Esophagitis#Medications", - "https://en.wikipedia.org/wiki/Zollinger%E2%80%93Ellison_syndrome#Treatment", - "https://en.wikipedia.org/wiki/Zollinger%E2%80%93Ellison_syndrome#Pathophysiology" + "https://en.wikipedia.org/wiki/Omeprazole#Mechanism_of_action" ] }, { @@ -103564,7 +103519,7 @@ ] }, { - "comments": "The disease is denoted as Sore throat symptom in the original file.", + "comment": "The disease is also known as Sore throat symptom as per the original file.", "directed": true, "graph": { "_id": "DB06742_MESH_D010612_1", @@ -103576,34 +103531,29 @@ }, "links": [ { - "key": "increases abundance of", + "key": "negatively regulates", "source": "MESH:D000551", - "target": "MESH:D011663" - }, - { - "key": "produced by", - "source": "MESH:D011663", - "target": "MESH:D056809" + "target": "GO:0038060" }, { - "key": "part of", - "source": "MESH:D056809", - "target": "UBERON:0000065" + "key": "positively correlated with", + "source": "GO:0038060", + "target": "GO:0006954" }, { - "key": "location of", - "source": "UBERON:0000065", - "target": "MESH:D010612" + "key": "positively correlated with", + "source": "GO:0006954", + "target": "HP:0033050" }, { "key": "negatively regulates", "source": "MESH:D000551", - "target": "GO:0038060" + "target": "Pfam:PF06512" }, { "key": "positively correlated with", - "source": "GO:0038060", - "target": "MESH:D007249" + "source": "Pfam:PF06512", + "target": "GO:0006954" }, { "key": "increases abundance of", @@ -103620,33 +103570,18 @@ "source": "HP:0031602", "target": "HP:0033050" }, - { - "key": "negatively regulates", - "source": "MESH:D000551", - "target": "Pfam:PF06512" - }, { "key": "positively correlated with", "source": "Pfam:PF06512", - "target": "MESH:D010146" - }, - { - "key": "positively correlated with", - "source": "Pfam:PF06512", - "target": "MESH:D007249" - }, - { - "key": "positively correlated with", - "source": "MESH:D010146", - "target": "HP:0033050" + "target": "HP:0012531" }, { "key": "positively correlated with", - "source": "MESH:D007249", + "source": "HP:0012531", "target": "HP:0033050" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0033050", "target": "MESH:D010612" } @@ -103658,29 +103593,14 @@ "label": "Drug", "name": "ambroxol" }, - { - "id": "MESH:D011663", - "label": "ChemicalSubstance", - "name": "Pulmonary Surfactants" - }, - { - "id": "MESH:D056809", - "label": "Cell", - "name": "Alveolar Epithelial Cells" - }, - { - "id": "UBERON:0000065", - "label": "GrossAnatomicalStructure", - "name": "respiratory tract" - }, { "id": "GO:0038060", "label": "BiologicalProcess", "name": "nitric oxide-cGMP-mediated signaling pathway" }, { - "id": "MESH:D010146", - "label": "BiologicalProcess", + "id": "HP:0012531", + "label": "PhenotypicFeature", "name": "Pain" }, { @@ -103699,13 +103619,13 @@ "name": "Sodium ion transport-associated" }, { - "id": "MESH:D007249", - "label": "PhenotypicFeature", - "name": "Inflammation" + "id": "GO:0006954", + "label": "BiologicalProcess", + "name": "inflammatory response" }, { "id": "HP:0033050", - "label": "BiologicalProcess", + "label": "PhenotypicFeature", "name": "Pharyngalgia" }, { @@ -103722,7 +103642,7 @@ ] }, { - "comments": "Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption. There are different types of hyponatremia, and medications like tolvaptan should only be used in those patients with high volume or normal volume hyponatremia (https://en.wikipedia.org/wiki/Hyponatremia#Medications).", + "comment": "Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption. There are different types of hyponatremia, and medications like tolvaptan should only be used in those patients with high volume or normal volume hyponatremia (https://en.wikipedia.org/wiki/Hyponatremia#Medications).", "directed": true, "graph": { "_id": "DB06212_MESH_D007010_1", @@ -103789,7 +103709,7 @@ ] }, { - "comments": "This disease is denoted as Syndrome of inappropriate vasopressin secretion in the original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption.", + "comment": "This disease is also known as Syndrome of inappropriate vasopressin secretion as per the original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption.", "directed": true, "graph": { "_id": "DB06212_MESH_D007177_1", @@ -103860,7 +103780,7 @@ ] }, { - "comments": "This disease is denoted as Polycystic kidney disease adult type in the original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption.", + "comment": "This disease is also known as Polycystic kidney disease adult type as per the original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption.", "directed": true, "graph": { "_id": "DB06212_MESH_D016891_1", @@ -103897,7 +103817,7 @@ "target": "HP:0000107" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0000107", "target": "MESH:D016891" }, @@ -104019,7 +103939,7 @@ ] }, { - "comments": "In Parkinson's disease, there is imbalance between levels of acetylcholine and dopamine, where increased levels of acetylcholine and degeneration of dopaminergic pathways are observed. Therefore, muscarinic antagonists such as biperiden block central cholinergic activity and balancing out neurotransmitters in the brain (https://en.wikipedia.org/wiki/Muscarinic_antagonist#Effects). Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/).", + "comment": "In Parkinson's disease, there is imbalance between levels of acetylcholine and dopamine, where increased levels of acetylcholine and degeneration of dopaminergic pathways are observed. Therefore, muscarinic antagonists such as biperiden block central cholinergic activity and balancing out neurotransmitters in the brain (https://en.wikipedia.org/wiki/Muscarinic_antagonist#Effects). Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/).", "directed": true, "graph": { "_id": "DB00810_MESH_D010300_1", @@ -104043,6 +103963,11 @@ { "key": "positively correlated with", "source": "GO:0007271", + "target": "HP:0100022" + }, + { + "key": "manifestation of", + "source": "HP:0100022", "target": "MESH:D010300" } ], @@ -104066,6 +103991,11 @@ "label": "BiologicalProcess", "name": "synaptic transmission, cholinergic" }, + { + "id": "HP:0100022", + "label": "PhenotypicFeature", + "name": "Abnormality of movement" + }, { "id": "MESH:D010300", "label": "Disease", @@ -104077,7 +104007,7 @@ ] }, { - "comments": "The disease is denoted as Postencephalitic parkinsonism in the original file. This disease is believed to be caused by a viral infection, leading to clinical parkinsonism (https://en.wikipedia.org/wiki/Postencephalitic_parkinsonism) and anti-Parkinson drugs may be helpful in treating the symptoms (https://en.wikipedia.org/wiki/Encephalitis_lethargica). For example, muscarinic antagonists can allow dopamine levels to rebalance, which can help relieve some Parkinsonian symptoms e.g. involuntary movements. Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/).", + "comment": "The disease is denoted as Postencephalitic parkinsonism in the original file. This disease is believed to be caused by a viral infection, leading to clinical parkinsonism (https://en.wikipedia.org/wiki/Postencephalitic_parkinsonism) and anti-Parkinson drugs may be helpful in treating the symptoms (https://en.wikipedia.org/wiki/Encephalitis_lethargica). For example, muscarinic antagonists can allow dopamine levels to rebalance, which can help relieve some Parkinsonian symptoms e.g. involuntary movements. Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/).", "directed": true, "graph": { "_id": "DB00810_MESH_D010301_1", @@ -104104,7 +104034,7 @@ "target": "HP:0100022" }, { - "key": "manifestation of", + "key": "positively correlated with", "source": "HP:0100022", "target": "HP:0001300" }, @@ -104155,7 +104085,7 @@ ] }, { - "comments": "The disease is denoted as Parkinsonism in the original file. Muscarinic antagonists can allow dopamine levels to rebalance, which can help relieve some Parkinsonian symptoms e.g. involuntary movements. Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/).", + "comment": "The disease is also known as Parkinsonism as per the original file. Muscarinic antagonists can allow dopamine levels to rebalance, which can help relieve some Parkinsonian symptoms e.g. involuntary movements. Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/).", "directed": true, "graph": { "_id": "DB00810_MESH_D020734_1", @@ -104224,7 +104154,7 @@ ] }, { - "comments": "The disease is denoted as Extrapyramidal disease in the original file.", + "comment": "The disease is also known as Extrapyramidal disease as per the original file.", "directed": true, "graph": { "_id": "DB00810_MESH_D001480_1", @@ -110495,7 +110425,7 @@ ] }, { - "comments": "The drug is no longer FDA approved (https://en.wikipedia.org/wiki/Tocolytic#Types_of_agents).", + "comment": "The drug is no longer FDA approved (https://en.wikipedia.org/wiki/Tocolytic#Types_of_agents).", "directed": true, "graph": { "_id": "DB00867_MESH_D007752_1", @@ -110973,7 +110903,7 @@ ] }, { - "comments": "There seems to be no evidence linking sulfacetamide as treatment for Amebic infection. Sulfacetamide is an antibacterial type of drug (https://www.kegg.jp/entry/D05947) and it seems the drug has some anti-inflammatory role. Since the disease could lead to inflammation and ulceration of the colon perhaps there could be an anti-inflammation hypothesis but the drug is mainly available as eye drops and lotions (https://en.wikipedia.org/wiki/Sulfacetamide#Available_forms), and therefore unavailable to treat the intestinal tract in such formats. Note there are few amoeba species that may cause skin or eye issues (https://en.wikipedia.org/wiki/Acanthamoeba_keratitis), in which case sulfacetamide could potentially be an indication, albeit no evidence to prove this assumption has been found in databases or literature.", + "comment": "There seems to be no evidence linking sulfacetamide as treatment for Amebic infection. Sulfacetamide is an antibacterial type of drug (https://www.kegg.jp/entry/D05947) and it seems the drug has some anti-inflammatory role. Since the disease could lead to inflammation and ulceration of the colon perhaps there could be an anti-inflammation hypothesis but the drug is mainly available as eye drops and lotions (https://en.wikipedia.org/wiki/Sulfacetamide#Available_forms), and therefore unavailable to treat the intestinal tract in such formats. Note there are few amoeba species that may cause skin or eye issues (https://en.wikipedia.org/wiki/Acanthamoeba_keratitis), in which case sulfacetamide could potentially be an indication, albeit no evidence to prove this assumption has been found in databases or literature.", "directed": true, "graph": { "_id": "DB00634_MESH_D000562_1", @@ -110985,13 +110915,13 @@ }, "links": [ { - "key": "decreases activity of", + "key": "negatively regulates", "source": "MESH:D013409", - "target": "MESH:D007249" + "target": "GO:0006954" }, { - "key": "positively correlated with", - "source": "MESH:D007249", + "key": "caused by", + "source": "GO:0006954", "target": "MESH:D000562" } ], @@ -111003,9 +110933,9 @@ "name": "sulfacetamide" }, { - "id": "MESH:D007249", + "id": "GO:0006954", "label": "BiologicalProcess", - "name": "Inflammation" + "name": "inflammatory response" }, { "id": "MESH:D000562", @@ -111018,7 +110948,7 @@ ] }, { - "comments": "The action of the drug on 5-HT2 receptors is of an inverse agonist (https://en.wikipedia.org/wiki/Inverse_agonist). The dopamine neurons are located in the mesolimbic dopaminergic system (BTO:0005591), which is a component pathway of the medial forebrain bundle (UBERON:0001910)(https://en.wikipedia.org/wiki/Medial_forebrain_bundle#Anatomy).", + "comment": "The action of the drug on 5-HT2 receptors is of an inverse agonist (https://en.wikipedia.org/wiki/Inverse_agonist). The dopamine neurons are located in the mesolimbic dopaminergic system (BTO:0005591), which is a component pathway of the medial forebrain bundle (UBERON:0001910)(https://en.wikipedia.org/wiki/Medial_forebrain_bundle#Anatomy).", "directed": true, "graph": { "_id": "DB08922_MESH_D012559_1", @@ -111125,27 +111055,27 @@ "target": "HP:0000741" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0100543", "target": "MESH:D012559" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0030213", "target": "MESH:D012559" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0012154", "target": "MESH:D012559" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0002465", "target": "MESH:D012559" }, { - "key": "positively correlated with", + "key": "manifestation of", "source": "HP:0000741", "target": "MESH:D012559" }, @@ -114963,7 +114893,7 @@ ] }, { - "comments": "Disease is denoted Infection by Onchocerca volvulus in the original file.", + "comment": "Disease is also known as Infection by Onchocerca volvulus as per the original file.", "directed": true, "graph": { "_id": "DB00602_MESH_D009855_2", @@ -114990,8 +114920,13 @@ "target": "GO:0060081" }, { - "key": "in taxon", + "key": "negatively regulates", "source": "GO:0060081", + "target": "GO:0099565" + }, + { + "key": "in taxon", + "source": "GO:0099565", "target": "NCBITaxon:6282" }, { @@ -115022,6 +114957,11 @@ "label": "BiologicalProcess", "name": "membrane hyperpolarization" }, + { + "id": "GO:0099565", + "label": "BiologicalProcess", + "name": "chemical synaptic transmission, postsynaptic" + }, { "id": "NCBITaxon:6282", "label": "OrganismTaxon", @@ -115036,11 +114976,11 @@ "reference": [ "https://en.wikipedia.org/wiki/Ivermectin#Mechanism_of_action", "https://go.drugbank.com/drugs/DB00602#mechanism-of-action", - "https://en.wikipedia.org/wiki/Strongyloidiasis#Treatment" + "https://en.wikipedia.org/wiki/Onchocerciasis#Ivermectin" ] }, { - "comments": "Disease is denoted Infection by Strongyloides in the original file.", + "comment": "Disease is denoted Infection by Strongyloides in the original file.", "directed": true, "graph": { "_id": "DB00602_MESH_D013322_1", @@ -115067,8 +115007,13 @@ "target": "GO:0060081" }, { - "key": "in taxon", + "key": "negatively regulates", "source": "GO:0060081", + "target": "GO:0099565" + }, + { + "key": "in taxon", + "source": "GO:0099565", "target": "NCBITaxon:6248" }, { @@ -115099,6 +115044,11 @@ "label": "BiologicalProcess", "name": "membrane hyperpolarization" }, + { + "id": "GO:0099565", + "label": "BiologicalProcess", + "name": "chemical synaptic transmission, postsynaptic" + }, { "id": "NCBITaxon:6248", "label": "OrganismTaxon", @@ -115117,7 +115067,7 @@ ] }, { - "comments": "Balsalazide is a prodrug and it releases mesalazine in the large intestine, the active site of ulcerative colitis (https://en.wikipedia.org/wiki/Balsalazide https://en.wikipedia.org/wiki/Mesalazine#Chemistry).", + "comment": "Balsalazide is a prodrug and it releases mesalazine in the large intestine, the active site of ulcerative colitis (https://en.wikipedia.org/wiki/Balsalazide https://en.wikipedia.org/wiki/Mesalazine#Chemistry).", "directed": true, "graph": { "_id": "DB01014_MESH_D003093_1", @@ -115129,14 +115079,19 @@ }, "links": [ { - "key": "produces", + "key": "has metabolite", "source": "MESH:C038637", "target": "MESH:D019804" }, { "key": "decreases activity of", "source": "MESH:D019804", - "target": "MESH:D011451" + "target": "UniProt:P35354" + }, + { + "key": "decreases activity of", + "source": "MESH:D019804", + "target": "UniProt:P23219" }, { "key": "decreases activity of", @@ -115161,7 +115116,7 @@ { "key": "positively correlated with", "source": "GO:0007249", - "target": "MESH:D007249" + "target": "GO:0006954" }, { "key": "decreases activity of", @@ -115181,17 +115136,7 @@ { "key": "positively correlated with", "source": "REACT:R-HSA-1169091", - "target": "MESH:D007249" - }, - { - "key": "positively regulates", - "source": "UniProt:P37231", - "target": "GO:0060249" - }, - { - "key": "located in", - "source": "GO:0060249", - "target": "UBERON:0001155" + "target": "GO:0006954" }, { "key": "participates in", @@ -115200,27 +115145,32 @@ }, { "key": "participates in", - "source": "MESH:D011451", + "source": "UniProt:P35354", + "target": "REACT:R-HSA-2162123" + }, + { + "key": "participates in", + "source": "UniProt:P23219", "target": "REACT:R-HSA-2162123" }, { "key": "positively correlated with", "source": "REACT:R-HSA-2162123", - "target": "MESH:D007249" + "target": "GO:0006954" }, { "key": "positively correlated with", "source": "REACT:R-HSA-2142691", - "target": "MESH:D007249" + "target": "GO:0006954" }, { "key": "located in", - "source": "MESH:D007249", + "source": "GO:0006954", "target": "UBERON:0001052" }, { "key": "located in", - "source": "MESH:D007249", + "source": "GO:0006954", "target": "UBERON:0001155" }, { @@ -115243,13 +115193,18 @@ }, { "id": "MESH:D019804", - "label": "Drug", + "label": "ChemicalSubstance", "name": "Mesalamine" }, { - "id": "MESH:D011451", - "label": "GeneFamily", - "name": "Prostaglandin-Endoperoxide Synthases" + "id": "UniProt:P23219", + "label": "Protein", + "name": "Prostaglandin G/H synthase 1" + }, + { + "id": "UniProt:P35354", + "label": "Protein", + "name": "Prostaglandin G/H synthase 2" }, { "id": "UniProt:P09917", @@ -115276,11 +115231,6 @@ "label": "BiologicalProcess", "name": "I-kappaB kinase/NF-kappaB signaling" }, - { - "id": "GO:0060249", - "label": "BiologicalProcess", - "name": "anatomical structure homeostasis" - }, { "id": "REACT:R-HSA-2142691", "label": "Pathway", @@ -115297,9 +115247,9 @@ "name": "Activation of NF-kappaB in B cells" }, { - "id": "MESH:D007249", + "id": "GO:0006954", "label": "BiologicalProcess", - "name": "Inflammation" + "name": "inflammatory response" }, { "id": "UBERON:0001052", @@ -115513,7 +115463,7 @@ ] }, { - "comments": "Imatinib also modulates other protein targets and is an indication for other malignancies (https://en.wikipedia.org/wiki/Imatinib#Medical_uses).", + "comment": "Imatinib also modulates other protein targets and is an indication for other malignancies (https://en.wikipedia.org/wiki/Imatinib#Medical_uses).", "directed": true, "graph": { "_id": "DB00619_MESH_D015466_1", @@ -115682,7 +115632,7 @@ ] }, { - "comments": "The disease is denoted Chronic eosinophilic leukemia in the original file. The malignancy is driven by FIP1L1-PDGFRA fusion genes (https://en.wikipedia.org/wiki/FIP1L1#FIP1L1-PDGFRA_fusion_genes).", + "comment": "The disease is also known as Chronic eosinophilic leukemia as per the original file. The malignancy is driven by FIP1L1-PDGFRA fusion genes (https://en.wikipedia.org/wiki/FIP1L1#FIP1L1-PDGFRA_fusion_genes).", "directed": true, "graph": { "_id": "DB00619_MESH_C580364_1", @@ -115696,11 +115646,11 @@ { "key": "decreases activity of", "source": "MESH:D000068877", - "target": "MESH:D017479" + "target": "UniProt:P16234" }, { "key": "positively regulates", - "source": "MESH:D017479", + "source": "UniProt:P16234", "target": "GO:0048008" }, { @@ -115727,9 +115677,9 @@ "name": "imatinib" }, { - "id": "MESH:D017479", - "label": "GeneFamily", - "name": "Receptors, Platelet-Derived Growth Factor" + "id": "UniProt:P16234", + "label": "Protein", + "name": "Platelet-derived growth factor receptor alpha" }, { "id": "GO:0048008", @@ -115762,7 +115712,7 @@ ] }, { - "comments": "The disease is denoted Idiopathic hypereosinophilic syndrome in the original file. Treatment with imatinib is indicated for patients who have a tyrosine kinase fusion protein (https://en.wikipedia.org/wiki/Hypereosinophilic_syndrome#Diagnosis), a PDGFRA-FIP1L1 chimera, where PDGR is an oncogene (https://en.wikipedia.org/wiki/Oncogene#Classification).", + "comment": "The disease is also known as Idiopathic hypereosinophilic syndrome as per the original file. Treatment with imatinib is indicated for patients who have a PDGFRA-FIP1L1 chimera, where PDGR, a tyrosine kinase (https://en.wikipedia.org/wiki/Hypereosinophilic_syndrome#Diagnosis) and an oncogene (https://en.wikipedia.org/wiki/Oncogene#Classification) is fused with FIP1L1, giving rise to a PDGFRA-FIP1L1 chimera.", "directed": true, "graph": { "_id": "DB00619_MESH_D017681_1", @@ -115776,11 +115726,6 @@ { "key": "decreases activity of", "source": "MESH:D000068877", - "target": "MESH:D015514" - }, - { - "key": "derives from", - "source": "MESH:D015514", "target": "UniProt:P16234" }, { @@ -115806,11 +115751,6 @@ "label": "Drug", "name": "imatinib" }, - { - "id": "MESH:D015514", - "label": "GeneFamily", - "name": "Oncogene Proteins, Fusion" - }, { "id": "UniProt:P16234", "label": "Protein", @@ -115840,7 +115780,7 @@ ] }, { - "comments": "The majority of Gastrointestinal stromal tumor patients have mutations on the KIT or PDGFRA genes (95% of all patients).", + "comment": "The majority of Gastrointestinal stromal tumor patients have mutations on the KIT or PDGFRA genes (95% of all patients).", "directed": true, "graph": { "_id": "DB00619_MESH_D046152_1", @@ -115968,7 +115908,7 @@ ] }, { - "comments": "The majority of Dermatofibrosarcoma tumours have two genes fused due to a translocation involving the collagen gene (COL1A1) and platelet-derived growth factor (PDGF) genes.", + "comment": "The majority of dermatofibrosarcoma tumours have two genes fused due to a translocation involving the collagen gene (COL1A1) and the platelet-derived growth factor (PDGF). The latter can be further subdivided giving rise to PDGFA, for example, which is an oncogene.", "directed": true, "graph": { "_id": "DB00619_MESH_D018223_1", @@ -115982,26 +115922,21 @@ { "key": "decreases activity of", "source": "MESH:D000068877", - "target": "MESH:D050506" - }, - { - "key": "derives from", - "source": "MESH:D050506", - "target": "MESH:D010982" + "target": "UniProt:P16234" }, { "key": "positively regulates", - "source": "MESH:D010982", + "source": "UniProt:P16234", "target": "GO:0030154" }, { "key": "positively regulates", - "source": "MESH:D010982", + "source": "UniProt:P16234", "target": "GO:0008283" }, { "key": "positively regulates", - "source": "MESH:D010982", + "source": "UniProt:P16234", "target": "MESH:D002470" }, { @@ -116028,14 +115963,9 @@ "name": "imatinib" }, { - "id": "MESH:D050506", - "label": "GeneFamily", - "name": "Mutant Chimeric Proteins" - }, - { - "id": "MESH:D010982", - "label": "GeneFamily", - "name": "Platelet-Derived Growth Factor" + "id": "UniProt:P16234", + "label": "Protein", + "name": "Platelet-derived growth factor receptor alpha" }, { "id": "GO:0030154", @@ -116184,11 +116114,11 @@ { "key": "decreases activity of", "source": "MESH:D014700", - "target": "MESH:D020746" + "target": "UniProt:Q13936" }, { "key": "positively regulates", - "source": "MESH:D020746", + "source": "UniProt:Q13936", "target": "GO:0060402" }, { @@ -116202,7 +116132,7 @@ "target": "HP:0033533" }, { - "key": "positively correlated with", + "key": "affects risk for", "source": "HP:0033533", "target": "HP:0032263" }, @@ -116220,9 +116150,9 @@ "name": "verapamil" }, { - "id": "MESH:D020746", - "label": "GeneFamily", - "name": "Calcium Channels, L-Type" + "id": "UniProt:Q13936", + "label": "Protein", + "name": "Voltage-dependent L-type calcium channel subunit alpha-1C" }, { "id": "GO:0060402", @@ -116271,21 +116201,21 @@ { "key": "decreases activity of", "source": "MESH:D014700", - "target": "MESH:D020746" + "target": "UniProt:Q13936" }, { "key": "positively regulates", - "source": "MESH:D020746", + "source": "UniProt:Q13936", "target": "GO:0061337" }, { "key": "positively correlated with", "source": "GO:0061337", - "target": "MESH:D006339" + "target": "GO:0060047" }, { "key": "positively correlated with", - "source": "MESH:D006339", + "source": "GO:0060047", "target": "HP:0001692" }, { @@ -116302,9 +116232,9 @@ "name": "verapamil" }, { - "id": "MESH:D020746", - "label": "GeneFamily", - "name": "Calcium Channels, L-Type" + "id": "UniProt:Q13936", + "label": "Protein", + "name": "Voltage-dependent L-type calcium channel subunit alpha-1C" }, { "id": "GO:0061337", @@ -116312,9 +116242,9 @@ "name": "cardiac conduction" }, { - "id": "MESH:D006339", + "id": "GO:0060047", "label": "BiologicalProcess", - "name": "Heart Rate" + "name": "heart contraction" }, { "id": "HP:0001692", @@ -116349,11 +116279,11 @@ { "key": "decreases activity of", "source": "MESH:D014700", - "target": "MESH:D020746" + "target": "UniProt:Q13936" }, { "key": "positively regulates", - "source": "MESH:D020746", + "source": "UniProt:Q13936", "target": "GO:0060402" }, { @@ -116364,11 +116294,11 @@ { "key": "positively correlated with", "source": "GO:0042310", - "target": "MESH:D017202" + "target": "HP:0033401" }, { - "key": "positively correlated with", - "source": "MESH:D017202", + "key": "manifestation of", + "source": "HP:0033401", "target": "MESH:D054058" } ], @@ -116380,9 +116310,9 @@ "name": "verapamil" }, { - "id": "MESH:D020746", - "label": "GeneFamily", - "name": "Calcium Channels, L-Type" + "id": "UniProt:Q13936", + "label": "Protein", + "name": "Voltage-dependent L-type calcium channel subunit alpha-1C" }, { "id": "GO:0060402", @@ -116395,9 +116325,9 @@ "name": "vasoconstriction" }, { - "id": "MESH:D017202", + "id": "HP:0033401", "label": "PhenotypicFeature", - "name": "Myocardial Ischemia" + "name": "Tissue ischemia" }, { "id": "MESH:D054058", @@ -116426,11 +116356,11 @@ { "key": "decreases activity of", "source": "MESH:D014700", - "target": "MESH:D020746" + "target": "UniProt:Q13936" }, { "key": "positively regulates", - "source": "MESH:D020746", + "source": "UniProt:Q13936", "target": "GO:0060402" }, { @@ -116441,11 +116371,11 @@ { "key": "positively correlated with", "source": "GO:0042310", - "target": "MESH:D017202" + "target": "HP:0033401" }, { - "key": "positively correlated with", - "source": "MESH:D017202", + "key": "manifestation of", + "source": "HP:0033401", "target": "MESH:D000787" } ], @@ -116457,9 +116387,9 @@ "name": "verapamil" }, { - "id": "MESH:D020746", - "label": "GeneFamily", - "name": "Calcium Channels, L-Type" + "id": "UniProt:Q13936", + "label": "Protein", + "name": "Voltage-dependent L-type calcium channel subunit alpha-1C" }, { "id": "GO:0060402", @@ -116472,9 +116402,9 @@ "name": "vasoconstriction" }, { - "id": "MESH:D017202", + "id": "HP:0033401", "label": "PhenotypicFeature", - "name": "Myocardial Ischemia" + "name": "Tissue ischemia" }, { "id": "MESH:D000787", @@ -116491,7 +116421,7 @@ ] }, { - "comments": "The disease is denoted as Prinzmetal angina in the original file.", + "comment": "The disease is also known as Prinzmetal angina as per the original file.", "directed": true, "graph": { "_id": "DB00661_MESH_D000788_1", @@ -116505,11 +116435,11 @@ { "key": "decreases activity of", "source": "MESH:D014700", - "target": "MESH:D020746" + "target": "UniProt:Q13936" }, { "key": "positively regulates", - "source": "MESH:D020746", + "source": "UniProt:Q13936", "target": "GO:0060402" }, { @@ -116520,11 +116450,11 @@ { "key": "positively correlated with", "source": "GO:0042310", - "target": "MESH:D017202" + "target": "HP:0033401" }, { - "key": "positively correlated with", - "source": "MESH:D017202", + "key": "manifestation of", + "source": "HP:0033401", "target": "MESH:D000788" } ], @@ -116536,9 +116466,9 @@ "name": "verapamil" }, { - "id": "MESH:D020746", - "label": "GeneFamily", - "name": "Calcium Channels, L-Type" + "id": "UniProt:Q13936", + "label": "Protein", + "name": "Voltage-dependent L-type calcium channel subunit alpha-1C" }, { "id": "GO:0060402", @@ -116551,9 +116481,9 @@ "name": "vasoconstriction" }, { - "id": "MESH:D017202", + "id": "HP:0033401", "label": "PhenotypicFeature", - "name": "Myocardial Ischemia" + "name": "Tissue ischemia" }, { "id": "MESH:D000788", @@ -220835,5 +220765,1550 @@ "https://en.wikipedia.org/wiki/Factor_VIII", "https://en.wikipedia.org/wiki/Coagulation" ] + }, + { + "comment": "Withdrawn. Tridihexethyl is no longer available in the US market.", + "directed": true, + "graph": { + "_id": "DB00505_MESH_D010437_1", + "disease": "Peptic ulcer", + "disease_mesh": "MESH:D010437", + "drug": "Tridihexethyl", + "drug_mesh": "MESH:C005386", + "drugbank": "DB:DB00505" + }, + "links": [ + { + "key": "decreases activity of", + "source": "MESH:C005386", + "target": "UniProt:P20309" + }, + { + "key": "participates in", + "source": "UniProt:P20309", + "target": "GO:0001699" + }, + { + "key": "increases abundance of", + "source": "GO:0001699", + "target": "MESH:D005744" + }, + { + "key": "positively regulates", + "source": "MESH:D005744", + "target": "InterPro:IPR034162" + }, + { + "key": "positively correlated with", + "source": "InterPro:IPR034162", + "target": "MESH:D010437" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C005386", + "label": "Drug", + "name": "Tridihexethyl" + }, + { + "id": "UniProt:P20309", + "label": "Protein", + "name": "Muscarinic acetylcholine receptor M3" + }, + { + "id": "GO:0001699", + "label": "BiologicalProcess", + "name": "Acetylcholine-induced gastric acid secretion" + }, + { + "id": "MESH:D005744", + "label": "ChemicalSubstance", + "name": "Gastric acid" + }, + { + "id": "InterPro:IPR034162", + "label": "GeneFamily", + "name": "Pepsin catalytic domain" + }, + { + "id": "MESH:D010437", + "label": "Disease", + "name": "Peptic ulcer" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB00505" + ] + }, + { + "comment": "Withdrawn. Tridihexethyl is no longer available in the US market.", + "directed": true, + "graph": { + "_id": "DB00505_MESH_D013276_1", + "disease": "Gastric ulcer", + "disease_mesh": "MESH:D013276", + "drug": "Tridihexethyl", + "drug_mesh": "MESH:C005386", + "drugbank": "DB:DB00505" + }, + "links": [ + { + "key": "decreases activity of", + "source": "MESH:C005386", + "target": "UniProt:P20309" + }, + { + "key": "participates in", + "source": "UniProt:P20309", + "target": "GO:0001699" + }, + { + "key": "increases abundance of", + "source": "GO:0001699", + "target": "MESH:D005744" + }, + { + "key": "positively regulates", + "source": "MESH:D005744", + "target": "InterPro:IPR034162" + }, + { + "key": "positively correlated with", + "source": "InterPro:IPR034162", + "target": "MESH:D013276" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C005386", + "label": "Drug", + "name": "Tridihexethyl" + }, + { + "id": "UniProt:P20309", + "label": "Protein", + "name": "Muscarinic acetylcholine receptor M3" + }, + { + "id": "GO:0001699", + "label": "BiologicalProcess", + "name": "Acetylcholine-induced gastric acid secretion" + }, + { + "id": "MESH:D005744", + "label": "ChemicalSubstance", + "name": "Gastric acid" + }, + { + "id": "InterPro:IPR034162", + "label": "GeneFamily", + "name": "Pepsin catalytic domain" + }, + { + "id": "MESH:D013276", + "label": "Disease", + "name": "Gastric ulcer" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB00505" + ] + }, + { + "directed": true, + "graph": { + "_id": "DB00733_MESH_D062025_1", + "disease": "Organophosphate poisoning", + "disease_mesh": "MESH:D062025", + "drug": "pralidoxime", + "drug_mesh": "MESH:C028797", + "drugbank": "DB:DB00733" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C028797", + "target": "UniProt:P22303" + }, + { + "key": "positively regulates", + "source": "UniProt:P22303", + "target": "GO:0006581" + }, + { + "key": "decreases abundance of", + "source": "GO:0006581", + "target": "MESH:D000109" + }, + { + "key": "contributes to", + "source": "MESH:D000109", + "target": "GO:0032224" + }, + { + "key": "occurs in", + "source": "GO:0032224", + "target": "MESH:D062025" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C028797", + "label": "Drug", + "name": "Pralidoxime" + }, + { + "id": "UniProt:P22303", + "label": "Protein", + "name": "Acetylcholinesterase" + }, + { + "id": "GO:0006581", + "label": "BiologicalProcess", + "name": "Acetylcholine catabolic process" + }, + { + "id": "MESH:D000109", + "label": "ChemicalSubstance", + "name": "Acetylcholine" + }, + { + "id": "GO:0032224", + "label": "BiologicalProcess", + "name": "Positive regulation of synaptic transmission, cholinergic" + }, + { + "id": "MESH:D062025", + "label": "Disease", + "name": "Organophosphate poisoning" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB00733", + "https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1420/", + "https://en.wikipedia.org/wiki/Organophosphate_poisoning#Signs_and_symptoms" + ] + }, + { + "comment": "Trioxsalen is a psoralen derivative that has been used in combination with UV light to treat vitiligo, but has been discontinued by its manufacturer.", + "directed": true, + "graph": { + "_id": "DB04571_MESH_D014820_1", + "disease": "Vitiligo", + "disease_mesh": "MESH:D014820", + "drug": "trioxsalen", + "drug_mesh": "MESH:D014307", + "drugbank": "DB:DB04571" + }, + "links": [ + { + "key": "disrupts", + "source": "MESH:D014307", + "target": "MESH:D004247" + }, + { + "key": "participates in", + "source": "MESH:D004247", + "target": "GO:0006915" + }, + { + "key": "treats", + "source": "GO:0006915", + "target": "MESH:D014820" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:D014307", + "label": "Drug", + "name": "Trioxsalen" + }, + { + "id": "MESH:D004247", + "label": "ChemicalSubstance", + "name": "DNA" + }, + { + "id": "GO:0006915", + "label": "BiologicalProcess", + "name": "Apoptotic process" + }, + { + "id": "MESH:D014820", + "label": "Disease", + "name": "Vitiligo" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB04571", + "https://en.wikipedia.org/wiki/Vitiligo" + ] + }, + { + "comment": "The exact mechanism of action of ingenol mebutate in actinic keratosis is unknown.", + "directed": true, + "graph": { + "_id": "DB05013_MESH_D055623_1", + "disease": "Actinic keratosis", + "disease_mesh": "MESH:D055623", + "drug": "ingenol mebutate", + "drug_mesh": "MESH:C486592", + "drugbank": "DB:DB05013" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C486592", + "target": "UniProt:Q05655" + }, + { + "key": "positively correlated with", + "source": "UniProt:Q05655", + "target": "GO:0004697" + }, + { + "key": "increases activity of", + "source": "MESH:C486592", + "target": "UniProt:P17252" + }, + { + "key": "positively correlated with", + "source": "UniProt:P17252", + "target": "GO:0004697" + }, + { + "key": "positively 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"multigraph": true, + "nodes": [ + { + "id": "MESH:C005370", + "label": "Drug", + "name": "Tramazoline" + }, + { + "id": "UniProt:P08913", + "label": "Protein", + "name": "Alpha-2A adrenergic receptor" + }, + { + "id": "GO:0042310", + "label": "BiologicalProcess", + "name": "Vasoconstriction" + }, + { + "id": "HP:0001742", + "label": "PhenotypicFeature", + "name": "Nasal obstruction" + }, + { + "id": "MESH:D006255", + "label": "Disease", + "name": "Seasonal allergic rhinitis" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB06711#BE0000501", + "https://drugs.ncats.io/drug/4DG710Q678", + "https://pubmed.ncbi.nlm.nih.gov/16809058/" + ] + }, + { + "directed": true, + "graph": { + "_id": "DB13064_MESH_D065631_1", + "disease": "Allergic rhinitis", + "disease_mesh": "MESH:D065631", + "drug": "tramazoline", + "drug_mesh": "MESH:C005370", + "drugbank": "DB:DB13064" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C005370", + "target": "UniProt:P08913" + }, + { + "key": "positively regulates", + "source": "UniProt:P08913", + "target": "GO:0042310" + }, + { + "key": "negatively correlated with", + "source": "GO:0042310", + "target": "HP:0001742" + }, + { + "key": "positively correlated with", + "source": "HP:0001742", + "target": "MESH:D065631" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C005370", + "label": "Drug", + "name": "Tramazoline" + }, + { + "id": "UniProt:P08913", + "label": "Protein", + "name": "Alpha-2A adrenergic receptor" + }, + { + "id": "GO:0042310", + "label": "BiologicalProcess", + "name": "Vasoconstriction" + }, + { + "id": "HP:0001742", + "label": "PhenotypicFeature", + "name": "Nasal obstruction" + }, + { + "id": "MESH:D065631", + "label": "Disease", + "name": "Allergic rhinitis" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB06711#BE0000501", + "https://drugs.ncats.io/drug/4DG710Q678", + "https://pubmed.ncbi.nlm.nih.gov/16809058/" + ] + }, + { + "directed": true, + "graph": { + "_id": "DB13064_MESH_D003233_1", + "disease": "Allergic conjunctivitis", + "disease_mesh": "MESH:D003233", + "drug": "tramazoline", + "drug_mesh": "MESH:C005370", + "drugbank": "DB:DB13064" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C005370", + "target": "UniProt:P08913" + }, + { + "key": "positively regulates", + "source": "UniProt:P08913", + "target": "GO:0042310" + }, + { + "key": "negatively correlated with", + "source": "GO:0042310", + "target": "HP:0010783" + }, + { + "key": "positively correlated with", + "source": "HP:0010783", + "target": "MESH:D003233" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C005370", + "label": "Drug", + "name": "Tramazoline" + }, + { + "id": "UniProt:P08913", + "label": "Protein", + "name": "Alpha-2A adrenergic receptor" + }, + { + "id": "GO:0042310", + "label": "BiologicalProcess", + "name": "Vasoconstriction" + }, + { + "id": "HP:0010783", + "label": "PhenotypicFeature", + "name": "Erythema" + }, + { + "id": "MESH:D003233", + "label": "Disease", + "name": "Allergic conjunctivitis" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB06711#BE0000501", + "https://drugs.ncats.io/drug/4DG710Q678", + "https://pubmed.ncbi.nlm.nih.gov/16809058/" + ] + }, + { + "directed": true, + "graph": { + "_id": "DB13064_MESH_D012912_1", + "disease": "Sneezing", + "disease_mesh": "MESH:D012912", + "drug": "tramazoline", + "drug_mesh": "MESH:C005370", + "drugbank": "DB:DB13064" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C005370", + "target": "UniProt:P08913" + }, + { + "key": "positively regulates", + "source": "UniProt:P08913", + "target": "GO:0042310" + }, + { + "key": "negatively correlated with", + "source": "GO:0042310", + "target": "HP:0001742" + }, + { + "key": "positively correlated with", + "source": "HP:0001742", + "target": "MESH:D012220" + }, + { + "key": "positively correlated with", + "source": "MESH:D012220", + "target": "MESH:D012912" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C005370", + "label": "Drug", + "name": "Tramazoline" + }, + { + "id": "UniProt:P08913", + "label": "Protein", + "name": "Alpha-2A adrenergic receptor" + }, + { + "id": "GO:0042310", + "label": "BiologicalProcess", + "name": "Vasoconstriction" + }, + { + "id": "HP:0001742", + "label": "PhenotypicFeature", + "name": "Nasal obstruction" + }, + { + "id": "MESH:D012220", + "label": "Disease", + "name": "Rhinitis" + }, + { + "id": "MESH:D012912", + "label": "Disease", + "name": "Sneezing" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB06711#BE0000501", + "https://drugs.ncats.io/drug/4DG710Q678", + "https://pubmed.ncbi.nlm.nih.gov/16809058/" + ] + }, + { + "directed": true, + "graph": { + "_id": "DB13064_MESH_D012223_1", + "disease": "Vasomotor rhinitis", + "disease_mesh": "MESH:D012223", + "drug": "tramazoline", + "drug_mesh": "MESH:C005370", + "drugbank": "DB:DB13064" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C005370", + "target": "UniProt:P08913" + }, + { + "key": "positively regulates", + "source": "UniProt:P08913", + "target": "GO:0042310" + }, + { + "key": "negatively correlated with", + "source": "GO:0042310", + "target": "HP:0001742" + }, + { + "key": "positively correlated with", + "source": "HP:0001742", + "target": "MESH:D012223" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C005370", + "label": "Drug", + "name": "Tramazoline" + }, + { + "id": "UniProt:P08913", + "label": "Protein", + "name": "Alpha-2A adrenergic receptor" + }, + { + "id": "GO:0042310", + "label": "BiologicalProcess", + "name": "Vasoconstriction" + }, + { + "id": "HP:0001742", + "label": "PhenotypicFeature", + "name": "Nasal obstruction" + }, + { + "id": "MESH:D012223", + "label": "Disease", + "name": "Vasomotor rhinitis" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB06711#BE0000501", + "https://drugs.ncats.io/drug/4DG710Q678", + "https://pubmed.ncbi.nlm.nih.gov/16809058/" + ] + }, + { + "directed": true, + "graph": { + "_id": "DB13064_MESH_D003139_1", + "disease": "Common cold", + "disease_mesh": "MESH:D003139", + "drug": "tramazoline", + "drug_mesh": "MESH:C005370", + "drugbank": "DB:DB13064" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C005370", + "target": "UniProt:P08913" + }, + { + "key": "positively regulates", + "source": "UniProt:P08913", + "target": "GO:0042310" + }, + { + "key": "negatively correlated with", + "source": "GO:0042310", + "target": "HP:0001742" + }, + { + "key": "occurs in", + "source": "HP:0001742", + "target": "MESH:D003139" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C005370", + "label": "Drug", + "name": "Tramazoline" + }, + { + "id": "UniProt:P08913", + "label": "Protein", + "name": "Alpha-2A adrenergic receptor" + }, + { + "id": "GO:0042310", + "label": "BiologicalProcess", + "name": "Vasoconstriction" + }, + { + "id": "HP:0001742", + "label": "PhenotypicFeature", + "name": "Nasal obstruction" + }, + { + "id": "MESH:D003139", + "label": "Disease", + "name": "Common cold" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB06711#BE0000501", + "https://drugs.ncats.io/drug/4DG710Q678", + "https://pubmed.ncbi.nlm.nih.gov/16809058/" + ] } ] \ No newline at end of file diff --git a/indication_paths.yaml b/indication_paths.yaml index cf14e12c7..02a30173b 100644 --- a/indication_paths.yaml +++ b/indication_paths.yaml @@ -64549,8 +64549,7 @@ - https://en.wikipedia.org/wiki/Brimonidine#Mechanism_of_action - https://en.wikipedia.org/wiki/Rosacea#Medications - https://pubmed.ncbi.nlm.nih.gov/26566370/ -- comments: MESH:C000608451 may have been deprecated; no longer in MESH. - directed: true +- directed: true graph: _id: DB09087_MESH_D010437_1 disease: Peptic ulcer @@ -64559,23 +64558,17 @@ drug_mesh: MESH:D000534 drugbank: DB:DB09087 links: - - key: subclass of - source: MESH:D000534 - target: MESH:D000891 - - key: subclass of + - key: negatively regulates source: MESH:D000534 - target: MESH:D001252 - - key: negatively correlated with - source: MESH:D000891 target: GO:0006954 - - key: negatively correlated with - source: MESH:D001252 - target: MESH:D005744 + - key: negatively regulates + source: MESH:D000534 + target: GO:0001696 - key: positively correlated with source: GO:0006954 target: MESH:D010437 - key: positively correlated with - source: MESH:D005744 + source: GO:0001696 target: MESH:D010437 multigraph: true nodes: @@ -64584,15 +64577,9 @@ id: MESH:D000534 label: Drug name: alum - - id: MESH:D000891 - label: ChemicalSubstance - name: Anti-Infective Agents, Local - - id: MESH:D001252 - label: ChemicalSubstance - name: Astringents - - id: MESH:D005744 - label: ChemicalSubstance - name: Gastric Acid + - id: GO:0001696 + label: BiologicalProcess + name: gastric acid secretion - id: GO:0006954 label: BiologicalProcess name: inflammatory response @@ -64602,11 +64589,10 @@ reference: - https://go.drugbank.com/drugs/DB09087#pharmacodynamics - https://en.wikipedia.org/wiki/Potassium_alum#Medicine_and_cosmetics -- comments: MESH:C000608451 may have been deprecated; no longer in MESH. The disease - is denotated as Indigestion in the original file before curation. Note that - the majority of cases no cause can be attributed to leading to the disease. - When a cause can indeed be determined, the majority of cases will be due to - gastroesophageal reflux and gastritis (https://en.wikipedia.org/wiki/Indigestion#Cause). +- comment: The disease is also known as Indigestion as per in the original file + before curation. Note that in the majority of cases no cause can be attributed + to leading to the disease. When a cause can indeed be determined, the majority + of cases will be due to gastroesophageal reflux and gastritis (https://en.wikipedia.org/wiki/Indigestion#Cause). directed: true graph: _id: DB09087_MESH_D004415_1 @@ -64616,28 +64602,22 @@ drug_mesh: MESH:D000534 drugbank: DB:DB09087 links: - - key: subclass of - source: MESH:D000534 - target: MESH:D000891 - - key: subclass of + - key: negatively regulates source: MESH:D000534 - target: MESH:D001252 - - key: negatively correlated with - source: MESH:D000891 target: GO:0006954 - - key: negatively correlated with - source: MESH:D001252 - target: MESH:D005744 + - key: negatively regulates + source: MESH:D000534 + target: GO:0001696 - key: positively correlated with source: GO:0006954 target: HP:0005263 - key: positively correlated with - source: MESH:D005744 + source: GO:0001696 target: HP:0002020 - - key: positively correlated with + - key: manifestation of source: HP:0002020 target: MESH:D004415 - - key: positively correlated with + - key: manifestation of source: HP:0005263 target: MESH:D004415 multigraph: true @@ -64647,15 +64627,9 @@ id: MESH:D000534 label: Drug name: alum - - id: MESH:D000891 - label: ChemicalSubstance - name: Anti-Infective Agents, Local - - id: MESH:D001252 - label: ChemicalSubstance - name: Astringents - - id: MESH:D005744 - label: ChemicalSubstance - name: Gastric Acid + - id: GO:0001696 + label: BiologicalProcess + name: gastric acid secretion - id: HP:0005263 label: PhenotypicFeature name: Gastritis @@ -64765,7 +64739,7 @@ - https://go.drugbank.com/drugs/DB09087#pharmacodynamics - https://en.wikipedia.org/wiki/Potassium_alum#Medicine_and_cosmetics - https://en.wikipedia.org/wiki/Gastroesophageal_reflux_disease#Antacids -- comments: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor +- comment: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively @@ -64824,7 +64798,7 @@ - https://go.drugbank.com/drugs/DB00736#mechanism-of-action - https://en.wikipedia.org/wiki/Esomeprazole - https://en.wikipedia.org/wiki/Omeprazole#Mechanism_of_action -- comments: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor +- comment: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively @@ -64854,7 +64828,7 @@ - key: positively correlated with source: GO:0001696 target: HP:0002020 - - key: positively correlated with + - key: manifestation of source: HP:0004791 target: MESH:D004942 - key: manifestation of @@ -64889,7 +64863,7 @@ - https://en.wikipedia.org/wiki/Omeprazole#Mechanism_of_action - https://en.wikipedia.org/wiki/Esophagitis#Causes - https://en.wikipedia.org/wiki/Esophagitis#Medications -- comments: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor +- comment: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively @@ -64919,10 +64893,10 @@ - key: positively correlated with source: GO:0001696 target: HP:0002588 - - key: positively correlated with + - key: manifestation of source: HP:0002588 target: MESH:D015043 - - key: positively correlated with + - key: manifestation of source: HP:0004398 target: MESH:D015043 multigraph: true @@ -64956,7 +64930,7 @@ - https://en.wikipedia.org/wiki/Esophagitis#Medications - https://en.wikipedia.org/wiki/Zollinger%E2%80%93Ellison_syndrome#Treatment - https://en.wikipedia.org/wiki/Zollinger%E2%80%93Ellison_syndrome#Pathophysiology -- comments: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor +- comment: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively @@ -65004,10 +64978,6 @@ - https://go.drugbank.com/drugs/DB00736#mechanism-of-action - https://en.wikipedia.org/wiki/Esomeprazole - https://en.wikipedia.org/wiki/Omeprazole#Mechanism_of_action - - https://en.wikipedia.org/wiki/Esophagitis#Causes - - https://en.wikipedia.org/wiki/Esophagitis#Medications - - https://en.wikipedia.org/wiki/Zollinger%E2%80%93Ellison_syndrome#Treatment - - https://en.wikipedia.org/wiki/Zollinger%E2%80%93Ellison_syndrome#Pathophysiology - directed: true graph: _id: DB01048_MESH_D015658_2 @@ -65061,7 +65031,8 @@ reference: - https://go.drugbank.com/drugs/DB01048#mechanism-of-action - https://en.wikipedia.org/wiki/Abacavir#Mechanism_of_action -- comments: The disease is denoted as Sore throat symptom in the original file. +- comment: The disease is also known as Sore throat symptom as per the original + file. directed: true graph: _id: DB06742_MESH_D010612_1 @@ -65071,24 +65042,21 @@ drug_mesh: MESH:D000551 drugbank: DB:DB06742 links: - - key: increases abundance of - source: MESH:D000551 - target: MESH:D011663 - - key: produced by - source: MESH:D011663 - target: MESH:D056809 - - key: part of - source: MESH:D056809 - target: UBERON:0000065 - - key: location of - source: UBERON:0000065 - target: MESH:D010612 - key: negatively regulates source: MESH:D000551 target: GO:0038060 - key: positively correlated with source: GO:0038060 - target: MESH:D007249 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: HP:0033050 + - key: negatively regulates + source: MESH:D000551 + target: Pfam:PF06512 + - key: positively correlated with + source: Pfam:PF06512 + target: GO:0006954 - key: increases abundance of source: GO:0038060 target: UBERON:0016552 @@ -65098,22 +65066,13 @@ - key: positively correlated with source: HP:0031602 target: HP:0033050 - - key: negatively regulates - source: MESH:D000551 - target: Pfam:PF06512 - - key: positively correlated with - source: Pfam:PF06512 - target: MESH:D010146 - key: positively correlated with source: Pfam:PF06512 - target: MESH:D007249 - - key: positively correlated with - source: MESH:D010146 - target: HP:0033050 + target: HP:0012531 - key: positively correlated with - source: MESH:D007249 + source: HP:0012531 target: HP:0033050 - - key: positively correlated with + - key: manifestation of source: HP:0033050 target: MESH:D010612 multigraph: true @@ -65121,20 +65080,11 @@ - id: MESH:D000551 label: Drug name: ambroxol - - id: MESH:D011663 - label: ChemicalSubstance - name: Pulmonary Surfactants - - id: MESH:D056809 - label: Cell - name: Alveolar Epithelial Cells - - id: UBERON:0000065 - label: GrossAnatomicalStructure - name: respiratory tract - id: GO:0038060 label: BiologicalProcess name: nitric oxide-cGMP-mediated signaling pathway - - id: MESH:D010146 - label: BiologicalProcess + - id: HP:0012531 + label: PhenotypicFeature name: Pain - id: UBERON:0016552 label: GrossAnatomicalStructure @@ -65145,11 +65095,11 @@ - id: Pfam:PF06512 label: GeneFamily name: Sodium ion transport-associated - - id: MESH:D007249 - label: PhenotypicFeature - name: Inflammation - - id: HP:0033050 + - id: GO:0006954 label: BiologicalProcess + name: inflammatory response + - id: HP:0033050 + label: PhenotypicFeature name: Pharyngalgia - id: MESH:D010612 label: Disease @@ -65159,7 +65109,7 @@ - https://go.drugbank.com/drugs/DB06742#mechanism-of-action - https://pubmed.ncbi.nlm.nih.gov/28937232/ - https://en.wikipedia.org/wiki/Sore_throat#Diagnosis -- comments: Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). +- comment: Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption. There are different @@ -65207,8 +65157,8 @@ - https://go.drugbank.com/drugs/DB06212#mechanism-of-action - https://pubmed.ncbi.nlm.nih.gov/20868352/ - https://en.wikipedia.org/wiki/Vasopressin_receptor_antagonist -- comments: This disease is denoted as Syndrome of inappropriate vasopressin secretion - in the original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). +- comment: This disease is also known as Syndrome of inappropriate vasopressin secretion + as per the original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption. @@ -65257,8 +65207,8 @@ - https://pubmed.ncbi.nlm.nih.gov/20868352/ - https://en.wikipedia.org/wiki/Vasopressin_receptor_antagonist - https://en.wikipedia.org/wiki/Syndrome_of_inappropriate_antidiuretic_hormone_secretion#Treatment -- comments: This disease is denoted as Polycystic kidney disease adult type in the - original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). +- comment: This disease is also known as Polycystic kidney disease adult type as + per the original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption. @@ -65286,7 +65236,7 @@ - key: positively correlated with source: CHEBI:17489 target: HP:0000107 - - key: positively correlated with + - key: manifestation of source: HP:0000107 target: MESH:D016891 - key: positively correlated with @@ -65362,7 +65312,7 @@ - https://en.wikipedia.org/wiki/Aminolevulinic_acid#Medical_uses - https://en.wikipedia.org/wiki/Actinic_keratosis#Procedures - https://en.wikipedia.org/wiki/Photodynamic_therapy#Photosensitizers -- comments: In Parkinson's disease, there is imbalance between levels of acetylcholine +- comment: In Parkinson's disease, there is imbalance between levels of acetylcholine and dopamine, where increased levels of acetylcholine and degeneration of dopaminergic pathways are observed. Therefore, muscarinic antagonists such as biperiden block central cholinergic activity and balancing out neurotransmitters @@ -65386,6 +65336,9 @@ target: GO:0007271 - key: positively correlated with source: GO:0007271 + target: HP:0100022 + - key: manifestation of + source: HP:0100022 target: MESH:D010300 multigraph: true nodes: @@ -65400,12 +65353,15 @@ - id: GO:0007271 label: BiologicalProcess name: synaptic transmission, cholinergic + - id: HP:0100022 + label: PhenotypicFeature + name: Abnormality of movement - id: MESH:D010300 label: Disease name: Parkinson's disease reference: - https://go.drugbank.com/drugs/DB00810#mechanism-of-action -- comments: The disease is denoted as Postencephalitic parkinsonism in the original +- comment: The disease is denoted as Postencephalitic parkinsonism in the original file. This disease is believed to be caused by a viral infection, leading to clinical parkinsonism (https://en.wikipedia.org/wiki/Postencephalitic_parkinsonism) and anti-Parkinson drugs may be helpful in treating the symptoms (https://en.wikipedia.org/wiki/Encephalitis_lethargica). @@ -65431,7 +65387,7 @@ - key: positively correlated with source: GO:0007271 target: HP:0100022 - - key: manifestation of + - key: positively correlated with source: HP:0100022 target: HP:0001300 - key: manifestation of @@ -65461,7 +65417,7 @@ name: Parkinson Disease, Postencephalitic reference: - https://go.drugbank.com/drugs/DB00810#mechanism-of-action -- comments: The disease is denoted as Parkinsonism in the original file. Muscarinic +- comment: The disease is also known as Parkinsonism as per the original file. Muscarinic antagonists can allow dopamine levels to rebalance, which can help relieve some Parkinsonian symptoms e.g. involuntary movements. Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/). @@ -65508,7 +65464,8 @@ reference: - https://go.drugbank.com/drugs/DB00810#mechanism-of-action - https://en.wikipedia.org/wiki/Muscarinic_antagonist#Effects -- comments: The disease is denoted as Extrapyramidal disease in the original file. +- comment: The disease is also known as Extrapyramidal disease as per the original + file. directed: true graph: _id: DB00810_MESH_D001480_1 @@ -69453,7 +69410,7 @@ name: Urinary tract infectious disease reference: - https://go.drugbank.com/drugs/DB00827#mechanism-of-action -- comments: The drug is no longer FDA approved (https://en.wikipedia.org/wiki/Tocolytic#Types_of_agents). +- comment: The drug is no longer FDA approved (https://en.wikipedia.org/wiki/Tocolytic#Types_of_agents). directed: true graph: _id: DB00867_MESH_D007752_1 @@ -69751,7 +69708,7 @@ - https://go.drugbank.com/drugs/DB09265 - https://en.wikipedia.org/wiki/Lixisenatide#Mechanism_of_action - https://en.wikipedia.org/wiki/Glucagon-like_peptide-1_receptor#Function_and_therapeutic_potential -- comments: There seems to be no evidence linking sulfacetamide as treatment for +- comment: There seems to be no evidence linking sulfacetamide as treatment for Amebic infection. Sulfacetamide is an antibacterial type of drug (https://www.kegg.jp/entry/D05947) and it seems the drug has some anti-inflammatory role. Since the disease could lead to inflammation and ulceration of the colon perhaps there could be an @@ -69770,26 +69727,26 @@ drug_mesh: MESH:D013409 drugbank: DB:DB00634 links: - - key: decreases activity of + - key: negatively regulates source: MESH:D013409 - target: MESH:D007249 - - key: positively correlated with - source: MESH:D007249 + target: GO:0006954 + - key: caused by + source: GO:0006954 target: MESH:D000562 multigraph: true nodes: - id: MESH:D013409 label: Drug name: sulfacetamide - - id: MESH:D007249 + - id: GO:0006954 label: BiologicalProcess - name: Inflammation + name: inflammatory response - id: MESH:D000562 label: Disease name: Amebic infection reference: - https://go.drugbank.com/drugs/DB00634#mechanism-of-action -- comments: The action of the drug on 5-HT2 receptors is of an inverse agonist (https://en.wikipedia.org/wiki/Inverse_agonist). +- comment: The action of the drug on 5-HT2 receptors is of an inverse agonist (https://en.wikipedia.org/wiki/Inverse_agonist). The dopamine neurons are located in the mesolimbic dopaminergic system (BTO:0005591), which is a component pathway of the medial forebrain bundle (UBERON:0001910)(https://en.wikipedia.org/wiki/Medial_forebrain_bundle#Anatomy). directed: true @@ -69858,19 +69815,19 @@ - key: correlated with source: UBERON:0009834 target: HP:0000741 - - key: positively correlated with + - key: manifestation of source: HP:0100543 target: MESH:D012559 - - key: positively correlated with + - key: manifestation of source: HP:0030213 target: MESH:D012559 - - key: positively correlated with + - key: manifestation of source: HP:0012154 target: MESH:D012559 - - key: positively correlated with + - key: manifestation of source: HP:0002465 target: MESH:D012559 - - key: positively correlated with + - key: manifestation of source: HP:0000741 target: MESH:D012559 - key: manifestation of @@ -72305,8 +72262,8 @@ name: Glaucoma reference: - https://go.drugbank.com/drugs/DB08808#mechanism-of-action -- comments: Disease is denoted Infection by Onchocerca volvulus in the original - file. +- comment: Disease is also known as Infection by Onchocerca volvulus as per the + original file. directed: true graph: _id: DB00602_MESH_D009855_2 @@ -72325,8 +72282,11 @@ - key: positively correlated with source: GO:0005254 target: GO:0060081 - - key: in taxon + - key: negatively regulates source: GO:0060081 + target: GO:0099565 + - key: in taxon + source: GO:0099565 target: NCBITaxon:6282 - key: causes source: NCBITaxon:6282 @@ -72345,6 +72305,9 @@ - id: GO:0060081 label: BiologicalProcess name: membrane hyperpolarization + - id: GO:0099565 + label: BiologicalProcess + name: chemical synaptic transmission, postsynaptic - id: NCBITaxon:6282 label: OrganismTaxon name: Onchocerca volvulus @@ -72354,8 +72317,8 @@ reference: - https://en.wikipedia.org/wiki/Ivermectin#Mechanism_of_action - https://go.drugbank.com/drugs/DB00602#mechanism-of-action - - https://en.wikipedia.org/wiki/Strongyloidiasis#Treatment -- comments: Disease is denoted Infection by Strongyloides in the original file. + - https://en.wikipedia.org/wiki/Onchocerciasis#Ivermectin +- comment: Disease is denoted Infection by Strongyloides in the original file. directed: true graph: _id: DB00602_MESH_D013322_1 @@ -72374,8 +72337,11 @@ - key: positively correlated with source: GO:0005254 target: GO:0060081 - - key: in taxon + - key: negatively regulates source: GO:0060081 + target: GO:0099565 + - key: in taxon + source: GO:0099565 target: NCBITaxon:6248 - key: causes source: NCBITaxon:6248 @@ -72394,6 +72360,9 @@ - id: GO:0060081 label: BiologicalProcess name: membrane hyperpolarization + - id: GO:0099565 + label: BiologicalProcess + name: chemical synaptic transmission, postsynaptic - id: NCBITaxon:6248 label: OrganismTaxon name: Strongyloides stercoralis @@ -72404,7 +72373,7 @@ - https://en.wikipedia.org/wiki/Ivermectin#Mechanism_of_action - https://go.drugbank.com/drugs/DB00602#mechanism-of-action - https://en.wikipedia.org/wiki/Strongyloidiasis#Treatment -- comments: Balsalazide is a prodrug and it releases mesalazine in the large intestine, +- comment: Balsalazide is a prodrug and it releases mesalazine in the large intestine, the active site of ulcerative colitis (https://en.wikipedia.org/wiki/Balsalazide https://en.wikipedia.org/wiki/Mesalazine#Chemistry). directed: true @@ -72416,12 +72385,15 @@ drug_mesh: MESH:C038637 drugbank: DB:DB01014 links: - - key: produces + - key: has metabolite source: MESH:C038637 target: MESH:D019804 - key: decreases activity of source: MESH:D019804 - target: MESH:D011451 + target: UniProt:P35354 + - key: decreases activity of + source: MESH:D019804 + target: UniProt:P23219 - key: decreases activity of source: MESH:D019804 target: UniProt:O15111 @@ -72436,7 +72408,7 @@ target: GO:0007249 - key: positively correlated with source: GO:0007249 - target: MESH:D007249 + target: GO:0006954 - key: decreases activity of source: MESH:D019804 target: UniProt:P09917 @@ -72448,30 +72420,27 @@ target: REACT:R-HSA-1169091 - key: positively correlated with source: REACT:R-HSA-1169091 - target: MESH:D007249 - - key: positively regulates - source: UniProt:P37231 - target: GO:0060249 - - key: located in - source: GO:0060249 - target: UBERON:0001155 + target: GO:0006954 - key: participates in source: UniProt:P09917 target: REACT:R-HSA-2142691 - key: participates in - source: MESH:D011451 + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P23219 target: REACT:R-HSA-2162123 - key: positively correlated with source: REACT:R-HSA-2162123 - target: MESH:D007249 + target: GO:0006954 - key: positively correlated with source: REACT:R-HSA-2142691 - target: MESH:D007249 + target: GO:0006954 - key: located in - source: MESH:D007249 + source: GO:0006954 target: UBERON:0001052 - key: located in - source: MESH:D007249 + source: GO:0006954 target: UBERON:0001155 - key: location of source: UBERON:0001052 @@ -72485,11 +72454,14 @@ label: Drug name: balsalazide - id: MESH:D019804 - label: Drug + label: ChemicalSubstance name: Mesalamine - - id: MESH:D011451 - label: GeneFamily - name: Prostaglandin-Endoperoxide Synthases + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 - id: UniProt:P09917 label: Protein name: Polyunsaturated fatty acid 5-lipoxygenase @@ -72505,9 +72477,6 @@ - id: GO:0007249 label: BiologicalProcess name: I-kappaB kinase/NF-kappaB signaling - - id: GO:0060249 - label: BiologicalProcess - name: anatomical structure homeostasis - id: REACT:R-HSA-2142691 label: Pathway name: Synthesis of Leukotrienes (LT) and Eoxins (EX) @@ -72517,9 +72486,9 @@ - id: REACT:R-HSA-1169091 label: Pathway name: Activation of NF-kappaB in B cells - - id: MESH:D007249 + - id: GO:0006954 label: BiologicalProcess - name: Inflammation + name: inflammatory response - id: UBERON:0001052 label: GrossAnatomicalStructure name: rectum @@ -72650,7 +72619,7 @@ - https://go.drugbank.com/drugs/DB01224#mechanism-of-action - https://go.drugbank.com/drugs/DB01224#BE0000451 - https://go.drugbank.com/drugs/DB01224#BE0000756 -- comments: Imatinib also modulates other protein targets and is an indication for +- comment: Imatinib also modulates other protein targets and is an indication for other malignancies (https://en.wikipedia.org/wiki/Imatinib#Medical_uses). directed: true graph: @@ -72759,8 +72728,8 @@ - https://www.cancer.gov/publications/dictionaries/cancer-drug/def/imatinib-mesylate - https://en.wikipedia.org/wiki/Leukocytosis#Causes - https://en.wikipedia.org/wiki/Chronic_myelogenous_leukemia#Chronic_phase_2 -- comments: The disease is denoted Chronic eosinophilic leukemia in the original - file. The malignancy is driven by FIP1L1-PDGFRA fusion genes (https://en.wikipedia.org/wiki/FIP1L1#FIP1L1-PDGFRA_fusion_genes). +- comment: The disease is also known as Chronic eosinophilic leukemia as per the + original file. The malignancy is driven by FIP1L1-PDGFRA fusion genes (https://en.wikipedia.org/wiki/FIP1L1#FIP1L1-PDGFRA_fusion_genes). directed: true graph: _id: DB00619_MESH_C580364_1 @@ -72772,9 +72741,9 @@ links: - key: decreases activity of source: MESH:D000068877 - target: MESH:D017479 + target: UniProt:P16234 - key: positively regulates - source: MESH:D017479 + source: UniProt:P16234 target: GO:0048008 - key: positively correlated with source: GO:0048008 @@ -72790,9 +72759,9 @@ - id: MESH:D000068877 label: Drug name: imatinib - - id: MESH:D017479 - label: GeneFamily - name: Receptors, Platelet-Derived Growth Factor + - id: UniProt:P16234 + label: Protein + name: Platelet-derived growth factor receptor alpha - id: GO:0048008 label: BiologicalProcess name: platelet-derived growth factor receptor signaling pathway @@ -72812,10 +72781,11 @@ - https://en.wikipedia.org/wiki/Chronic_eosinophilic_leukemia - https://en.wikipedia.org/wiki/Eosinophilia#Chronic_eosinophilic_leukemia_(NOS) - https://en.wikipedia.org/wiki/Imatinib#Other -- comments: The disease is denoted Idiopathic hypereosinophilic syndrome in the - original file. Treatment with imatinib is indicated for patients who have - a tyrosine kinase fusion protein (https://en.wikipedia.org/wiki/Hypereosinophilic_syndrome#Diagnosis), - a PDGFRA-FIP1L1 chimera, where PDGR is an oncogene (https://en.wikipedia.org/wiki/Oncogene#Classification). +- comment: The disease is also known as Idiopathic hypereosinophilic syndrome as + per the original file. Treatment with imatinib is indicated for patients who + have a PDGFRA-FIP1L1 chimera, where PDGR, a tyrosine kinase (https://en.wikipedia.org/wiki/Hypereosinophilic_syndrome#Diagnosis) + and an oncogene (https://en.wikipedia.org/wiki/Oncogene#Classification) is + fused with FIP1L1, giving rise to a PDGFRA-FIP1L1 chimera. directed: true graph: _id: DB00619_MESH_D017681_1 @@ -72827,9 +72797,6 @@ links: - key: decreases activity of source: MESH:D000068877 - target: MESH:D015514 - - key: derives from - source: MESH:D015514 target: UniProt:P16234 - key: positively regulates source: UniProt:P16234 @@ -72845,9 +72812,6 @@ - id: MESH:D000068877 label: Drug name: imatinib - - id: MESH:D015514 - label: GeneFamily - name: Oncogene Proteins, Fusion - id: UniProt:P16234 label: Protein name: Platelet-derived growth factor receptor alpha @@ -72865,7 +72829,7 @@ - https://go.drugbank.com/drugs/DB00619#BE0000205 - https://go.drugbank.com/drugs/DB00619#BE0000852 - https://en.wikipedia.org/wiki/Imatinib#Other -- comments: The majority of Gastrointestinal stromal tumor patients have mutations +- comment: The majority of Gastrointestinal stromal tumor patients have mutations on the KIT or PDGFRA genes (95% of all patients). directed: true graph: @@ -72946,9 +72910,10 @@ - https://en.wikipedia.org/wiki/Imatinib#Gastrointestinal_stromal_tumors - https://go.drugbank.com/drugs/DB00619#BE0000453 - https://go.drugbank.com/drugs/DB00619#BE0000852 -- comments: The majority of Dermatofibrosarcoma tumours have two genes fused due - to a translocation involving the collagen gene (COL1A1) and platelet-derived - growth factor (PDGF) genes. +- comment: The majority of dermatofibrosarcoma tumours have two genes fused due + to a translocation involving the collagen gene (COL1A1) and the platelet-derived + growth factor (PDGF). The latter can be further subdivided giving rise to + PDGFA, for example, which is an oncogene. directed: true graph: _id: DB00619_MESH_D018223_1 @@ -72960,18 +72925,15 @@ links: - key: decreases activity of source: MESH:D000068877 - target: MESH:D050506 - - key: derives from - source: MESH:D050506 - target: MESH:D010982 + target: UniProt:P16234 - key: positively regulates - source: MESH:D010982 + source: UniProt:P16234 target: GO:0030154 - key: positively regulates - source: MESH:D010982 + source: UniProt:P16234 target: GO:0008283 - key: positively regulates - source: MESH:D010982 + source: UniProt:P16234 target: MESH:D002470 - key: positively correlated with source: GO:0008283 @@ -72987,12 +72949,9 @@ - id: MESH:D000068877 label: Drug name: imatinib - - id: MESH:D050506 - label: GeneFamily - name: Mutant Chimeric Proteins - - id: MESH:D010982 - label: GeneFamily - name: Platelet-Derived Growth Factor + - id: UniProt:P16234 + label: Protein + name: Platelet-derived growth factor receptor alpha - id: GO:0030154 label: BiologicalProcess name: cell differentiation @@ -73086,9 +73045,9 @@ links: - key: decreases activity of source: MESH:D014700 - target: MESH:D020746 + target: UniProt:Q13936 - key: positively regulates - source: MESH:D020746 + source: UniProt:Q13936 target: GO:0060402 - key: positively correlated with source: GO:0060402 @@ -73096,7 +73055,7 @@ - key: positively correlated with source: GO:0042310 target: HP:0033533 - - key: positively correlated with + - key: affects risk for source: HP:0033533 target: HP:0032263 - key: manifestation of @@ -73107,9 +73066,9 @@ - id: MESH:D014700 label: Drug name: verapamil - - id: MESH:D020746 - label: GeneFamily - name: Calcium Channels, L-Type + - id: UniProt:Q13936 + label: Protein + name: Voltage-dependent L-type calcium channel subunit alpha-1C - id: GO:0060402 label: BiologicalProcess name: calcium ion transport into cytosol @@ -73141,15 +73100,15 @@ links: - key: decreases activity of source: MESH:D014700 - target: MESH:D020746 + target: UniProt:Q13936 - key: positively regulates - source: MESH:D020746 + source: UniProt:Q13936 target: GO:0061337 - key: positively correlated with source: GO:0061337 - target: MESH:D006339 + target: GO:0060047 - key: positively correlated with - source: MESH:D006339 + source: GO:0060047 target: HP:0001692 - key: manifestation of source: HP:0001692 @@ -73159,15 +73118,15 @@ - id: MESH:D014700 label: Drug name: verapamil - - id: MESH:D020746 - label: GeneFamily - name: Calcium Channels, L-Type + - id: UniProt:Q13936 + label: Protein + name: Voltage-dependent L-type calcium channel subunit alpha-1C - id: GO:0061337 label: BiologicalProcess name: cardiac conduction - - id: MESH:D006339 + - id: GO:0060047 label: BiologicalProcess - name: Heart Rate + name: heart contraction - id: HP:0001692 label: PhenotypicFeature name: Atrial arrhythmia @@ -73191,36 +73150,36 @@ links: - key: decreases activity of source: MESH:D014700 - target: MESH:D020746 + target: UniProt:Q13936 - key: positively regulates - source: MESH:D020746 + source: UniProt:Q13936 target: GO:0060402 - key: positively correlated with source: GO:0060402 target: GO:0042310 - key: positively correlated with source: GO:0042310 - target: MESH:D017202 - - key: positively correlated with - source: MESH:D017202 + target: HP:0033401 + - key: manifestation of + source: HP:0033401 target: MESH:D054058 multigraph: true nodes: - id: MESH:D014700 label: Drug name: verapamil - - id: MESH:D020746 - label: GeneFamily - name: Calcium Channels, L-Type + - id: UniProt:Q13936 + label: Protein + name: Voltage-dependent L-type calcium channel subunit alpha-1C - id: GO:0060402 label: BiologicalProcess name: calcium ion transport into cytosol - id: GO:0042310 label: BiologicalProcess name: vasoconstriction - - id: MESH:D017202 + - id: HP:0033401 label: PhenotypicFeature - name: Myocardial Ischemia + name: Tissue ischemia - id: MESH:D054058 label: Disease name: Acute coronary syndrome @@ -73240,36 +73199,36 @@ links: - key: decreases activity of source: MESH:D014700 - target: MESH:D020746 + target: UniProt:Q13936 - key: positively regulates - source: MESH:D020746 + source: UniProt:Q13936 target: GO:0060402 - key: positively correlated with source: GO:0060402 target: GO:0042310 - key: positively correlated with source: GO:0042310 - target: MESH:D017202 - - key: positively correlated with - source: MESH:D017202 + target: HP:0033401 + - key: manifestation of + source: HP:0033401 target: MESH:D000787 multigraph: true nodes: - id: MESH:D014700 label: Drug name: verapamil - - id: MESH:D020746 - label: GeneFamily - name: Calcium Channels, L-Type + - id: UniProt:Q13936 + label: Protein + name: Voltage-dependent L-type calcium channel subunit alpha-1C - id: GO:0060402 label: BiologicalProcess name: calcium ion transport into cytosol - id: GO:0042310 label: BiologicalProcess name: vasoconstriction - - id: MESH:D017202 + - id: HP:0033401 label: PhenotypicFeature - name: Myocardial Ischemia + name: Tissue ischemia - id: MESH:D000787 label: Disease name: Angina pectoris @@ -73279,7 +73238,7 @@ - https://en.wikipedia.org/wiki/Verapamil#Mechanism_of_action - https://en.wikipedia.org/wiki/Antiarrhythmic_agent#Class_IV_agents - https://en.wikipedia.org/wiki/Angina#Treatment -- comments: The disease is denoted as Prinzmetal angina in the original file. +- comment: The disease is also known as Prinzmetal angina as per the original file. directed: true graph: _id: DB00661_MESH_D000788_1 @@ -73291,36 +73250,36 @@ links: - key: decreases activity of source: MESH:D014700 - target: MESH:D020746 + target: UniProt:Q13936 - key: positively regulates - source: MESH:D020746 + source: UniProt:Q13936 target: GO:0060402 - key: positively correlated with source: GO:0060402 target: GO:0042310 - key: positively correlated with source: GO:0042310 - target: MESH:D017202 - - key: positively correlated with - source: MESH:D017202 + target: HP:0033401 + - key: manifestation of + source: HP:0033401 target: MESH:D000788 multigraph: true nodes: - id: MESH:D014700 label: Drug name: verapamil - - id: MESH:D020746 - label: GeneFamily - name: Calcium Channels, L-Type + - id: UniProt:Q13936 + label: Protein + name: Voltage-dependent L-type calcium channel subunit alpha-1C - id: GO:0060402 label: BiologicalProcess name: calcium ion transport into cytosol - id: GO:0042310 label: BiologicalProcess name: vasoconstriction - - id: MESH:D017202 + - id: HP:0033401 label: PhenotypicFeature - name: Myocardial Ischemia + name: Tissue ischemia - id: MESH:D000788 label: Disease name: Angina Pectoris, Variant @@ -138815,3 +138774,976 @@ - https://go.drugbank.com/drugs/DB09109 - https://en.wikipedia.org/wiki/Factor_VIII - https://en.wikipedia.org/wiki/Coagulation +- comment: Withdrawn. Tridihexethyl is no longer available in the US market. + directed: true + graph: + _id: DB00505_MESH_D010437_1 + disease: Peptic ulcer + disease_mesh: MESH:D010437 + drug: Tridihexethyl + drug_mesh: MESH:C005386 + drugbank: DB:DB00505 + links: + - key: decreases activity of + source: MESH:C005386 + target: UniProt:P20309 + - key: participates in + source: UniProt:P20309 + target: GO:0001699 + - key: increases abundance of + source: GO:0001699 + target: MESH:D005744 + - key: positively regulates + source: MESH:D005744 + target: InterPro:IPR034162 + - key: positively correlated with + source: InterPro:IPR034162 + target: MESH:D010437 + multigraph: true + nodes: + - id: MESH:C005386 + label: Drug + name: Tridihexethyl + - id: UniProt:P20309 + label: Protein + name: Muscarinic acetylcholine receptor M3 + - id: GO:0001699 + label: BiologicalProcess + name: Acetylcholine-induced gastric acid secretion + - id: MESH:D005744 + label: ChemicalSubstance + name: Gastric acid + - id: InterPro:IPR034162 + label: GeneFamily + name: Pepsin catalytic domain + - id: MESH:D010437 + label: Disease + name: Peptic ulcer + reference: + - https://go.drugbank.com/drugs/DB00505 +- comment: Withdrawn. Tridihexethyl is no longer available in the US market. + directed: true + graph: + _id: DB00505_MESH_D013276_1 + disease: Gastric ulcer + disease_mesh: MESH:D013276 + drug: Tridihexethyl + drug_mesh: MESH:C005386 + drugbank: DB:DB00505 + links: + - key: decreases activity of + source: MESH:C005386 + target: UniProt:P20309 + - key: participates in + source: UniProt:P20309 + target: GO:0001699 + - key: increases abundance of + source: GO:0001699 + target: MESH:D005744 + - key: positively regulates + source: MESH:D005744 + target: InterPro:IPR034162 + - key: positively correlated with + source: InterPro:IPR034162 + target: MESH:D013276 + multigraph: true + nodes: + - id: MESH:C005386 + label: Drug + name: Tridihexethyl + - id: UniProt:P20309 + label: Protein + name: Muscarinic acetylcholine receptor M3 + - id: GO:0001699 + label: BiologicalProcess + name: Acetylcholine-induced gastric acid secretion + - id: MESH:D005744 + label: ChemicalSubstance + name: Gastric acid + - id: InterPro:IPR034162 + label: GeneFamily + name: Pepsin catalytic domain + - id: MESH:D013276 + label: Disease + name: Gastric ulcer + reference: + - https://go.drugbank.com/drugs/DB00505 +- directed: true + graph: + _id: DB00733_MESH_D062025_1 + disease: Organophosphate poisoning + disease_mesh: MESH:D062025 + drug: pralidoxime + drug_mesh: MESH:C028797 + drugbank: DB:DB00733 + links: + - key: increases activity of + source: MESH:C028797 + target: UniProt:P22303 + - key: positively regulates + source: UniProt:P22303 + target: GO:0006581 + - key: decreases abundance of + source: GO:0006581 + target: MESH:D000109 + - key: contributes to + source: MESH:D000109 + target: GO:0032224 + - key: occurs in + source: GO:0032224 + target: MESH:D062025 + multigraph: true + nodes: + - id: MESH:C028797 + label: Drug + name: Pralidoxime + - id: UniProt:P22303 + label: Protein + name: Acetylcholinesterase + - id: GO:0006581 + label: BiologicalProcess + name: Acetylcholine catabolic process + - id: MESH:D000109 + label: ChemicalSubstance + name: Acetylcholine + - id: GO:0032224 + label: BiologicalProcess + name: Positive regulation of synaptic transmission, cholinergic + - id: MESH:D062025 + label: Disease + name: Organophosphate poisoning + reference: + - https://go.drugbank.com/drugs/DB00733 + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL1420/ + - https://en.wikipedia.org/wiki/Organophosphate_poisoning#Signs_and_symptoms +- comment: Trioxsalen is a psoralen derivative that has been used in combination + with UV light to treat vitiligo, but has been discontinued by its manufacturer. + directed: true + graph: + _id: DB04571_MESH_D014820_1 + disease: Vitiligo + disease_mesh: MESH:D014820 + drug: trioxsalen + drug_mesh: MESH:D014307 + drugbank: DB:DB04571 + links: + - key: disrupts + source: MESH:D014307 + target: MESH:D004247 + - key: participates in + source: MESH:D004247 + target: GO:0006915 + - key: treats + source: GO:0006915 + target: MESH:D014820 + multigraph: true + nodes: + - id: MESH:D014307 + label: Drug + name: Trioxsalen + - id: MESH:D004247 + label: ChemicalSubstance + name: DNA + - id: GO:0006915 + label: BiologicalProcess + name: Apoptotic process + - id: MESH:D014820 + label: Disease + name: Vitiligo + reference: + - https://go.drugbank.com/drugs/DB04571 + - https://en.wikipedia.org/wiki/Vitiligo +- comment: The exact mechanism of action of ingenol mebutate in actinic keratosis + is unknown. + directed: true + graph: + _id: DB05013_MESH_D055623_1 + disease: Actinic keratosis + disease_mesh: MESH:D055623 + drug: ingenol mebutate + drug_mesh: MESH:C486592 + drugbank: DB:DB05013 + links: + - key: increases activity of + source: MESH:C486592 + target: UniProt:Q05655 + - key: positively correlated with + source: UniProt:Q05655 + target: GO:0004697 + - key: increases activity of + source: MESH:C486592 + target: UniProt:P17252 + - key: positively correlated with + source: UniProt:P17252 + target: GO:0004697 + - key: positively regulates + source: GO:0004697 + target: GO:0070265 + - key: positively regulates + source: GO:0004697 + target: GO:0001788 + - key: treats + source: GO:0070265 + target: MESH:D055623 + - key: treats + source: GO:0001788 + target: MESH:D055623 + multigraph: true + nodes: + - id: MESH:C486592 + label: Drug + name: Ingenol mebutate + - id: UniProt:Q05655 + label: Protein + name: Protein kinase C delta type + - id: GO:0004697 + label: MolecularActivity + name: Protein kinase C activity + - id: UniProt:P17252 + label: Protein + name: Protein kinase C alpha type + - id: GO:0070265 + label: BiologicalProcess + name: Necrotic cell death + - id: GO:0001788 + label: BiologicalProcess + name: Antibody-dependent cellular cytotoxicity + - id: MESH:D055623 + label: Disease + name: Actinic keratosis + reference: + - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4257954/ + - https://en.wikipedia.org/wiki/Actinic_keratosis + - https://go.drugbank.com/drugs/DB05013 +- directed: true + graph: + _id: DB05311_MESH_D054179_1 + disease: Hereditary angioneurotic edema + disease_mesh: MESH:D054179 + drug: ecallantide + drug_mesh: MESH:C511194 + drugbank: DB:DB05311 + links: + - key: decreases activity of + source: MESH:C511194 + target: UniProt:P03952 + - key: increases abundance of + source: UniProt:P03952 + target: MESH:D001920 + - key: contributes to + source: MESH:D001920 + target: GO:0043117 + - key: contributes to + source: MESH:D001920 + target: GO:0006954 + - key: contributes to + source: GO:0043117 + target: HP:0000969 + - key: contributes to + source: GO:0006954 + target: HP:0012531 + - key: manifestation of + source: HP:0000969 + target: MESH:D054179 + - key: manifestation of + source: HP:0012531 + target: MESH:D054179 + multigraph: true + nodes: + - id: MESH:C511194 + label: Drug + name: Ecallantide + - id: UniProt:P03952 + label: Protein + name: Plasma kallikrein + - id: MESH:D001920 + label: ChemicalSubstance + name: Bradykinin + - id: GO:0043117 + label: BiologicalProcess + name: Positive regulation of vascular permeability + - id: GO:0006954 + label: BiologicalProcess + name: Inflammatory response + - id: HP:0000969 + label: PhenotypicFeature + name: Edema + - id: HP:0012531 + label: PhenotypicFeature + name: Pain + - id: MESH:D054179 + label: Disease + name: Hereditary angioneurotic edema + reference: + - https://go.drugbank.com/drugs/DB05311#BE0002440 + - https://en.wikipedia.org/wiki/Kinin%E2%80%93kallikrein_system +- directed: true + graph: + _id: DB06590_MESH_D011018_1 + disease: Pneumococcal pneumonia + disease_mesh: MESH:D011018 + drug: ceftaroline fosamil + drug_mesh: MESH:C515501 + drugbank: DB:DB06590 + links: + - key: has metabolite + source: MESH:C515501 + target: CHEBI:70729 + - key: decreases activity of + source: CHEBI:70729 + target: InterPro:IPR001460 + - key: positively regulates + source: InterPro:IPR001460 + target: GO:0009252 + - key: contributes to + source: GO:0009252 + target: GO:0009273 + - key: in taxon + source: GO:0009273 + target: NCBITaxon:1313 + - key: causes + source: NCBITaxon:1313 + target: MESH:D011018 + multigraph: true + nodes: + - id: MESH:C515501 + label: Drug + name: Ceftaroline fosamil + - id: CHEBI:70729 + label: ChemicalSubstance + name: Ceftaroline + - id: InterPro:IPR001460 + label: GeneFamily + name: Penicillin-binding protein, transpeptidase + - id: GO:0009252 + label: BiologicalProcess + name: Peptidoglycan biosynthetic process + - id: GO:0009273 + label: BiologicalProcess + name: Peptidoglycan-based cell wall biogenesis + - id: NCBITaxon:1313 + label: OrganismTaxon + name: Streptococcus pneumoniae + - id: MESH:D011018 + label: Disease + name: Pneumococcal pneumonia + reference: + - https://go.drugbank.com/drugs/DB06590 + - https://en.wikipedia.org/wiki/Ceftaroline_fosamil#Chemistry +- directed: true + graph: + _id: DB06590_MESH_D013203_1 + disease: Infection due to Staphylococcus aureus + disease_mesh: MESH:D013203 + drug: Ceftaroline fosamil + drug_mesh: MESH:C515501 + drugbank: DB:DB06590 + links: + - key: has metabolite + source: MESH:C515501 + target: CHEBI:70729 + - key: decreases activity of + source: CHEBI:70729 + target: InterPro:IPR001460 + - key: positively regulates + source: InterPro:IPR001460 + target: GO:0018104 + - key: positively regulates + source: GO:0018104 + target: GO:0009273 + - key: has output + source: GO:0009273 + target: GO:0005618 + - key: occurs in + source: GO:0005618 + target: NCBITaxon:1280 + - key: causes + source: NCBITaxon:1280 + target: MESH:D013203 + multigraph: true + nodes: + - id: MESH:C515501 + label: Drug + name: Ceftaroline fosamil + - id: CHEBI:70729 + label: ChemicalSubstance + name: Ceftaroline + - id: InterPro:IPR001460 + label: GeneFamily + name: Penicillin-binding protein, transpeptidase + - id: GO:0018104 + label: BiologicalProcess + name: Cross-linking of the peptidoglycan + - id: GO:0009273 + label: BiologicalProcess + name: Peptidoglycan-based cell wall biogenesis + - id: GO:0005618 + label: CellularComponent + name: Cell wall + - id: NCBITaxon:1280 + label: OrganismTaxon + name: Staphylococcus aureus + - id: MESH:D013203 + label: Disease + name: Infection due to Staphylococcus aureus + reference: + - https://go.drugbank.com/drugs/DB06590 + - https://en.wikipedia.org/wiki/Ceftaroline_fosamil#Chemistry +- directed: true + graph: + _id: DB06590_MESH_D012226_1 + disease: Rhinoscleroma + disease_mesh: MESH:D012226 + drug: Ceftaroline fosamil + drug_mesh: MESH:C515501 + drugbank: DB:DB06590 + links: + - key: has metabolite + source: MESH:C515501 + target: CHEBI:70729 + - key: decreases activity of + source: CHEBI:70729 + target: InterPro:IPR001460 + - key: positively regulates + source: InterPro:IPR001460 + target: GO:0018104 + - key: positively regulates + source: GO:0018104 + target: GO:0009273 + - key: has output + source: GO:0009273 + target: GO:0005618 + - key: occurs in + source: GO:0005618 + target: NCBITaxon:39831 + - key: causes + source: NCBITaxon:39831 + target: MESH:D012226 + multigraph: true + nodes: + - id: MESH:C515501 + label: Drug + name: Ceftaroline fosamil + - id: CHEBI:70729 + label: ChemicalSubstance + name: Ceftaroline + - id: InterPro:IPR001460 + label: GeneFamily + name: Penicillin-binding protein, transpeptidase + - id: GO:0018104 + label: BiologicalProcess + name: Cross-linking of the peptidoglycan + - id: GO:0009273 + label: BiologicalProcess + name: Peptidoglycan-based cell wall biogenesis + - id: GO:0005618 + label: CellularComponent + name: Cell wall + - id: NCBITaxon:39831 + label: OrganismTaxon + name: Klebsiella pneumoniae subsp. rhinoscleromatis + - id: MESH:D012226 + label: Disease + name: Rhinoscleroma + reference: + - https://go.drugbank.com/drugs/DB06590 + - https://en.wikipedia.org/wiki/Ceftaroline_fosamil#Chemistry + - https://en.wikipedia.org/wiki/Rhinoscleroma +- directed: true + graph: + _id: DB06590_MESH_D004927_1 + disease: Infection due to Escherichia coli + disease_mesh: MESH:D004927 + drug: Ceftaroline fosamil + drug_mesh: MESH:C515501 + drugbank: DB:DB06590 + links: + - key: has metabolite + source: MESH:C515501 + target: CHEBI:70729 + - key: decreases activity of + source: CHEBI:70729 + target: InterPro:IPR001460 + - key: positively regulates + source: InterPro:IPR001460 + target: GO:0018104 + - key: positively regulates + source: GO:0018104 + target: GO:0009273 + - key: has output + source: GO:0009273 + target: GO:0005618 + - key: occurs in + source: GO:0005618 + target: NCBITaxon:562 + - key: causes + source: NCBITaxon:562 + target: MESH:D004927 + multigraph: true + nodes: + - id: MESH:C515501 + label: Drug + name: Ceftaroline fosamil + - id: CHEBI:70729 + label: ChemicalSubstance + name: Ceftaroline + - id: InterPro:IPR001460 + label: GeneFamily + name: Penicillin-binding protein, transpeptidase + - id: GO:0018104 + label: BiologicalProcess + name: Cross-linking of the peptidoglycan + - id: GO:0009273 + label: BiologicalProcess + name: Peptidoglycan-based cell wall biogenesis + - id: GO:0005618 + label: CellularComponent + name: Cell wall + - id: NCBITaxon:562 + label: OrganismTaxon + name: Escherichia coli + - id: MESH:D004927 + label: Disease + name: Infection due to Escherichia coli + reference: + - https://go.drugbank.com/drugs/DB06590 + - https://en.wikipedia.org/wiki/Ceftaroline_fosamil#Chemistry + - https://en.wikipedia.org/wiki/Rhinoscleroma +- directed: true + graph: + _id: DB06590_MESH_D013290_1 + disease: Streptococcus pyogenes infection + disease_mesh: MESH:D013290 + drug: Ceftaroline fosamil + drug_mesh: MESH:C515501 + drugbank: DB:DB06590 + links: + - key: has metabolite + source: MESH:C515501 + target: CHEBI:70729 + - key: decreases activity of + source: CHEBI:70729 + target: InterPro:IPR001460 + - key: positively regulates + source: InterPro:IPR001460 + target: GO:0018104 + - key: positively regulates + source: GO:0018104 + target: GO:0009273 + - key: has output + source: GO:0009273 + target: GO:0005618 + - key: occurs in + source: GO:0005618 + target: NCBITaxon:1314 + - key: causes + source: NCBITaxon:1314 + target: MESH:D013290 + multigraph: true + nodes: + - id: MESH:C515501 + label: Drug + name: Ceftaroline fosamil + - id: CHEBI:70729 + label: ChemicalSubstance + name: Ceftaroline + - id: InterPro:IPR001460 + label: GeneFamily + name: Penicillin-binding protein, transpeptidase + - id: GO:0018104 + label: BiologicalProcess + name: Cross-linking of the peptidoglycan + - id: GO:0009273 + label: BiologicalProcess + name: Peptidoglycan-based cell wall biogenesis + - id: GO:0005618 + label: CellularComponent + name: Cell wall + - id: NCBITaxon:1314 + label: OrganismTaxon + name: Streptococcus pyogenes + - id: MESH:D013290 + label: Disease + name: Streptococcus pyogenes infection + reference: + - https://go.drugbank.com/drugs/DB06590 + - https://en.wikipedia.org/wiki/Ceftaroline_fosamil#Chemistry +- directed: true + graph: + _id: DB08816_MESH_D054058_1 + disease: Acute coronary syndrome + disease_mesh: MESH:D054058 + drug: ticagrelor + drug_mesh: MESH:C503700 + drugbank: DB:DB08816 + links: + - key: decreases activity of + source: MESH:C503700 + target: UniProt:Q9H244 + - key: positively regulates + source: UniProt:Q9H244 + target: GO:0007193 + - key: positively regulates + source: GO:0007193 + target: GO:0070527 + - key: positively correlated with + source: GO:0070527 + target: GO:0072378 + - key: contributes to + source: GO:0072378 + target: MESH:D054058 + multigraph: true + nodes: + - id: MESH:C503700 + label: Drug + name: Ticagrelor + - id: UniProt:Q9H244 + label: Protein + name: P2Y purinoceptor 12 + - id: GO:0007193 + label: BiologicalProcess + name: Adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway + - id: GO:0070527 + label: BiologicalProcess + name: Platelet aggregation + - id: GO:0072378 + label: BiologicalProcess + name: Blood coagulation, fibrin clot formation + - id: MESH:D054058 + label: Disease + name: Acute coronary syndrome + reference: + - https://go.drugbank.com/drugs/DB08816#BE0000110 +- directed: true + graph: + _id: DB08816_MESH_D016491_1 + disease: Peripheral vascular disease + disease_mesh: MESH:D016491 + drug: ticagrelor + drug_mesh: MESH:C503700 + drugbank: DB:DB08816 + links: + - key: decreases activity of + source: MESH:C503700 + target: UniProt:Q9H244 + - key: positively regulates + source: UniProt:Q9H244 + target: GO:0007193 + - key: positively regulates + source: GO:0007193 + target: GO:0070527 + - key: positively correlated with + source: GO:0070527 + target: GO:0072378 + - key: contributes to + source: GO:0072378 + target: MESH:D016491 + multigraph: true + nodes: + - id: MESH:C503700 + label: Drug + name: Ticagrelor + - id: UniProt:Q9H244 + label: Protein + name: P2Y purinoceptor 12 + - id: GO:0007193 + label: BiologicalProcess + name: Adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway + - id: GO:0070527 + label: BiologicalProcess + name: Platelet aggregation + - id: GO:0072378 + label: BiologicalProcess + name: Blood coagulation, fibrin clot formation + - id: MESH:D016491 + label: Disease + name: Peripheral vascular disease + reference: + - https://go.drugbank.com/drugs/DB08816#BE0000110 +- directed: true + graph: + _id: DB09113_MESH_D012127_1 + disease: Respiratory distress syndrome in the newborn + disease_mesh: MESH:D012127 + drug: poractant alfa + drug_mesh: MESH:C068291 + drugbank: DB:DB09113 + links: + - key: positively regulates + source: MESH:C068291 + target: GO:0043129 + - key: negatively correlated with + source: GO:0043129 + target: MESH:D012127 + multigraph: true + nodes: + - id: MESH:C068291 + label: Drug + name: Poractant alfa + - id: GO:0043129 + label: BiologicalProcess + name: Surfactant homeostasis + - id: MESH:D012127 + label: Disease + name: Respiratory distress syndrome in the newborn + reference: + - https://en.wikipedia.org/wiki/Infant_respiratory_distress_syndrome + - https://go.drugbank.com/drugs/DB09113 +- directed: true + graph: + _id: DB13064_MESH_D006255_1 + disease: Seasonal allergic rhinitis + disease_mesh: MESH:D006255 + drug: tramazoline + drug_mesh: MESH:C005370 + drugbank: DB:DB13064 + links: + - key: increases activity of + source: MESH:C005370 + target: UniProt:P08913 + - key: positively regulates + source: UniProt:P08913 + target: GO:0042310 + - key: negatively correlated with + source: GO:0042310 + target: HP:0001742 + - key: positively correlated with + source: HP:0001742 + target: MESH:D006255 + multigraph: true + nodes: + - id: MESH:C005370 + label: Drug + name: Tramazoline + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: GO:0042310 + label: BiologicalProcess + name: Vasoconstriction + - id: HP:0001742 + label: PhenotypicFeature + name: Nasal obstruction + - id: MESH:D006255 + label: Disease + name: Seasonal allergic rhinitis + reference: + - https://go.drugbank.com/drugs/DB06711#BE0000501 + - https://drugs.ncats.io/drug/4DG710Q678 + - https://pubmed.ncbi.nlm.nih.gov/16809058/ +- directed: true + graph: + _id: DB13064_MESH_D065631_1 + disease: Allergic rhinitis + disease_mesh: MESH:D065631 + drug: tramazoline + drug_mesh: MESH:C005370 + drugbank: DB:DB13064 + links: + - key: increases activity of + source: MESH:C005370 + target: UniProt:P08913 + - key: positively regulates + source: UniProt:P08913 + target: GO:0042310 + - key: negatively correlated with + source: GO:0042310 + target: HP:0001742 + - key: positively correlated with + source: HP:0001742 + target: MESH:D065631 + multigraph: true + nodes: + - id: MESH:C005370 + label: Drug + name: Tramazoline + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: GO:0042310 + label: BiologicalProcess + name: Vasoconstriction + - id: HP:0001742 + label: PhenotypicFeature + name: Nasal obstruction + - id: MESH:D065631 + label: Disease + name: Allergic rhinitis + reference: + - https://go.drugbank.com/drugs/DB06711#BE0000501 + - https://drugs.ncats.io/drug/4DG710Q678 + - https://pubmed.ncbi.nlm.nih.gov/16809058/ +- directed: true + graph: + _id: DB13064_MESH_D003233_1 + disease: Allergic conjunctivitis + disease_mesh: MESH:D003233 + drug: tramazoline + drug_mesh: MESH:C005370 + drugbank: DB:DB13064 + links: + - key: increases activity of + source: MESH:C005370 + target: UniProt:P08913 + - key: positively regulates + source: UniProt:P08913 + target: GO:0042310 + - key: negatively correlated with + source: GO:0042310 + target: HP:0010783 + - key: positively correlated with + source: HP:0010783 + target: MESH:D003233 + multigraph: true + nodes: + - id: MESH:C005370 + label: Drug + name: Tramazoline + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: GO:0042310 + label: BiologicalProcess + name: Vasoconstriction + - id: HP:0010783 + label: PhenotypicFeature + name: Erythema + - id: MESH:D003233 + label: Disease + name: Allergic conjunctivitis + reference: + - https://go.drugbank.com/drugs/DB06711#BE0000501 + - https://drugs.ncats.io/drug/4DG710Q678 + - https://pubmed.ncbi.nlm.nih.gov/16809058/ +- directed: true + graph: + _id: DB13064_MESH_D012912_1 + disease: Sneezing + disease_mesh: MESH:D012912 + drug: tramazoline + drug_mesh: MESH:C005370 + drugbank: DB:DB13064 + links: + - key: increases activity of + source: MESH:C005370 + target: UniProt:P08913 + - key: positively regulates + source: UniProt:P08913 + target: GO:0042310 + - key: negatively correlated with + source: GO:0042310 + target: HP:0001742 + - key: positively correlated with + source: HP:0001742 + target: MESH:D012220 + - key: positively correlated with + source: MESH:D012220 + target: MESH:D012912 + multigraph: true + nodes: + - id: MESH:C005370 + label: Drug + name: Tramazoline + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: GO:0042310 + label: BiologicalProcess + name: Vasoconstriction + - id: HP:0001742 + label: PhenotypicFeature + name: Nasal obstruction + - id: MESH:D012220 + label: Disease + name: Rhinitis + - id: MESH:D012912 + label: Disease + name: Sneezing + reference: + - https://go.drugbank.com/drugs/DB06711#BE0000501 + - https://drugs.ncats.io/drug/4DG710Q678 + - https://pubmed.ncbi.nlm.nih.gov/16809058/ +- directed: true + graph: + _id: DB13064_MESH_D012223_1 + disease: Vasomotor rhinitis + disease_mesh: MESH:D012223 + drug: tramazoline + drug_mesh: MESH:C005370 + drugbank: DB:DB13064 + links: + - key: increases activity of + source: MESH:C005370 + target: UniProt:P08913 + - key: positively regulates + source: UniProt:P08913 + target: GO:0042310 + - key: negatively correlated with + source: GO:0042310 + target: HP:0001742 + - key: positively correlated with + source: HP:0001742 + target: MESH:D012223 + multigraph: true + nodes: + - id: MESH:C005370 + label: Drug + name: Tramazoline + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: GO:0042310 + label: BiologicalProcess + name: Vasoconstriction + - id: HP:0001742 + label: PhenotypicFeature + name: Nasal obstruction + - id: MESH:D012223 + label: Disease + name: Vasomotor rhinitis + reference: + - https://go.drugbank.com/drugs/DB06711#BE0000501 + - https://drugs.ncats.io/drug/4DG710Q678 + - https://pubmed.ncbi.nlm.nih.gov/16809058/ +- directed: true + graph: + _id: DB13064_MESH_D003139_1 + disease: Common cold + disease_mesh: MESH:D003139 + drug: tramazoline + drug_mesh: MESH:C005370 + drugbank: DB:DB13064 + links: + - key: increases activity of + source: MESH:C005370 + target: UniProt:P08913 + - key: positively regulates + source: UniProt:P08913 + target: GO:0042310 + - key: negatively correlated with + source: GO:0042310 + target: HP:0001742 + - key: occurs in + source: HP:0001742 + target: MESH:D003139 + multigraph: true + nodes: + - id: MESH:C005370 + label: Drug + name: Tramazoline + - id: UniProt:P08913 + label: Protein + name: Alpha-2A adrenergic receptor + - id: GO:0042310 + label: BiologicalProcess + name: Vasoconstriction + - id: HP:0001742 + label: PhenotypicFeature + name: Nasal obstruction + - id: MESH:D003139 + label: Disease + name: Common cold + reference: + - https://go.drugbank.com/drugs/DB06711#BE0000501 + - https://drugs.ncats.io/drug/4DG710Q678 + - https://pubmed.ncbi.nlm.nih.gov/16809058/ diff --git a/submission.yaml b/submission.yaml index 87d093df5..8b1378917 100644 --- a/submission.yaml +++ b/submission.yaml @@ -1,1841 +1 @@ -- directed: true - graph: - _id: DB09087_MESH_D010437_1 - disease: Peptic ulcer - disease_mesh: MESH:D010437 - drug: alum - drug_mesh: MESH:D000534 - drugbank: DB:DB09087 - links: - - key: negatively regulates - source: MESH:D000534 - target: GO:0006954 - - key: negatively regulates - source: MESH:D000534 - target: GO:0001696 - - key: positively correlated with - source: GO:0006954 - target: MESH:D010437 - - key: positively correlated with - source: GO:0001696 - target: MESH:D010437 - multigraph: true - nodes: - - id: MESH:D000534 - label: Drug - name: alum - alt_ids: - - MESH:C041524 - - id: GO:0001696 - label: BiologicalProcess - name: gastric acid secretion - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D010437 - label: Disease - name: Peptic ulcer - reference: - - https://go.drugbank.com/drugs/DB09087#pharmacodynamics - - https://en.wikipedia.org/wiki/Potassium_alum#Medicine_and_cosmetics -- directed: true - graph: - _id: DB09087_MESH_D004415_1 - disease: Dyspepsia - disease_mesh: MESH:D004415 - drug: alum - drug_mesh: MESH:D000534 - drugbank: DB:DB09087 - links: - - key: negatively regulates - source: MESH:D000534 - target: GO:0006954 - - key: negatively regulates - source: MESH:D000534 - target: GO:0001696 - - key: positively correlated with - source: GO:0006954 - target: HP:0005263 - - key: positively correlated with - source: GO:0001696 - target: HP:0002020 - - key: manifestation of - source: HP:0002020 - target: MESH:D004415 - - key: manifestation of - source: HP:0005263 - target: MESH:D004415 - multigraph: true - nodes: - - id: MESH:D000534 - label: Drug - name: alum - alt_ids: - - MESH:C041524 - - id: GO:0001696 - label: BiologicalProcess - name: gastric acid secretion - - id: HP:0005263 - label: PhenotypicFeature - name: Gastritis - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: HP:0002020 - label: PhenotypicFeature - name: Gastroesophageal reflux - - id: MESH:D004415 - label: Disease - name: Dyspepsia - reference: - - https://go.drugbank.com/drugs/DB09087#pharmacodynamics - - https://en.wikipedia.org/wiki/Potassium_alum#Medicine_and_cosmetics - comment: The disease is also known as Indigestion as per in the original file before curation. Note that in the majority of cases no cause can be attributed to leading to the disease. When a cause can indeed be determined, the majority of cases will be due to gastroesophageal reflux and gastritis (https://en.wikipedia.org/wiki/Indigestion#Cause). -- directed: true - graph: - _id: DB00736_MESH_D005764_1 - disease: Gastroesophageal reflux disease - disease_mesh: MESH:D005764 - drug: esomeprazole - drug_mesh: MESH:D064098 - drugbank: DB:DB00736 - links: - - key: decreases activity of - source: MESH:D064098 - target: UniProt:P20648 - - key: positively correlated with - source: UniProt:P20648 - target: GO:0008900 - - key: located in - source: GO:0008900 - target: UBERON:0000325 - - key: positively correlated with - source: UBERON:0000325 - target: GO:0001696 - - key: positively correlated with - source: GO:0001696 - target: MESH:D006356 - - key: manifestation of - source: MESH:D006356 - target: MESH:D005764 - multigraph: true - nodes: - - id: MESH:D064098 - label: Drug - name: esomeprazole - - id: UniProt:P20648 - label: Protein - name: Potassium-transporting ATPase alpha chain 1 - - id: GO:0008900 - label: MolecularActivity - name: P-type potassium:proton transporter activity - - id: UBERON:0000325 - label: GrossAnatomicalStructure - name: gastric gland - - id: GO:0001696 - label: BiologicalProcess - name: gastric acid secretion - - id: MESH:D006356 - label: PhenotypicFeature - name: Heartburn - - id: MESH:D005764 - label: Disease - name: Gastroesophageal reflux disease - reference: - - https://go.drugbank.com/drugs/DB00736#mechanism-of-action - - https://en.wikipedia.org/wiki/Esomeprazole - - https://en.wikipedia.org/wiki/Omeprazole#Mechanism_of_action - comment: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). -- directed: true - graph: - _id: DB00736_MESH_D004942_1 - disease: Esophagitis, Peptic - disease_mesh: MESH:D004942 - drug: esomeprazole - drug_mesh: MESH:D064098 - drugbank: DB:DB00736 - links: - - key: decreases activity of - source: MESH:D064098 - target: UniProt:P20648 - - key: positively correlated with - source: UniProt:P20648 - target: GO:0008900 - - key: positively correlated with - source: GO:0008900 - target: GO:0001696 - - key: positively correlated with - source: GO:0001696 - target: HP:0004791 - - key: positively correlated with - source: GO:0001696 - target: HP:0002020 - - key: manifestation of - source: HP:0004791 - target: MESH:D004942 - - key: manifestation of - source: HP:0002020 - target: MESH:D004942 - multigraph: true - nodes: - - id: MESH:D064098 - label: Drug - name: esomeprazole - - id: UniProt:P20648 - label: Protein - name: Potassium-transporting ATPase alpha chain 1 - - id: GO:0008900 - label: MolecularActivity - name: P-type potassium:proton transporter activity - - id: GO:0001696 - label: BiologicalProcess - name: gastric acid secretion - - id: HP:0004791 - label: PhenotypicFeature - name: Esophageal ulceration - - id: HP:0002020 - label: PhenotypicFeature - name: Gastroesophageal reflux - - id: MESH:D004942 - label: Disease - name: Esophagitis, Peptic - reference: - - https://go.drugbank.com/drugs/DB00736#mechanism-of-action - - https://en.wikipedia.org/wiki/Esomeprazole - - https://en.wikipedia.org/wiki/Omeprazole#Mechanism_of_action - - https://en.wikipedia.org/wiki/Esophagitis#Causes - - https://en.wikipedia.org/wiki/Esophagitis#Medications - comment: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). This disease is denoted as Peptic reflux disease in the original file. -- directed: true - graph: - _id: DB00736_MESH_D015043_1 - disease: Zollinger-Ellison syndrome - disease_mesh: MESH:D015043 - drug: esomeprazole - drug_mesh: MESH:D064098 - drugbank: DB:DB00736 - links: - - key: decreases activity of - source: MESH:D064098 - target: UniProt:P20648 - - key: positively correlated with - source: UniProt:P20648 - target: GO:0008900 - - key: positively correlated with - source: GO:0008900 - target: GO:0001696 - - key: positively correlated with - source: GO:0001696 - target: HP:0004398 - - key: positively correlated with - source: GO:0001696 - target: HP:0002588 - - key: manifestation of - source: HP:0002588 - target: MESH:D015043 - - key: manifestation of - source: HP:0004398 - target: MESH:D015043 - multigraph: true - nodes: - - id: MESH:D064098 - label: Drug - name: esomeprazole - - id: UniProt:P20648 - label: Protein - name: Potassium-transporting ATPase alpha chain 1 - - id: GO:0008900 - label: MolecularActivity - name: P-type potassium:proton transporter activity - - id: GO:0001696 - label: BiologicalProcess - name: gastric acid secretion - - id: HP:0002588 - label: PhenotypicFeature - name: Duodenal ulcer - - id: HP:0004398 - label: PhenotypicFeature - name: Peptic Ulcer - - id: MESH:D015043 - label: Disease - name: Zollinger-Ellison syndrome - reference: - - https://go.drugbank.com/drugs/DB00736#mechanism-of-action - - https://en.wikipedia.org/wiki/Esomeprazole - - https://en.wikipedia.org/wiki/Omeprazole#Mechanism_of_action - - https://en.wikipedia.org/wiki/Esophagitis#Causes - - https://en.wikipedia.org/wiki/Esophagitis#Medications - - https://en.wikipedia.org/wiki/Zollinger%E2%80%93Ellison_syndrome#Treatment - - https://en.wikipedia.org/wiki/Zollinger%E2%80%93Ellison_syndrome#Pathophysiology - comment: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). This disease is denoted as Peptic reflux disease in the original file. -- directed: true - graph: - _id: DB00736_MESH_D010437_1 - disease: Peptic ulcer - disease_mesh: MESH:D010437 - drug: esomeprazole - drug_mesh: MESH:D064098 - drugbank: DB:DB00736 - links: - - key: decreases activity of - source: MESH:D064098 - target: UniProt:P20648 - - key: positively correlated with - source: UniProt:P20648 - target: GO:0008900 - - key: positively correlated with - source: GO:0008900 - target: GO:0001696 - - key: positively correlated with - source: GO:0001696 - target: MESH:D010437 - multigraph: true - nodes: - - id: MESH:D064098 - label: Drug - name: esomeprazole - - id: UniProt:P20648 - label: Protein - name: Potassium-transporting ATPase alpha chain 1 - - id: GO:0008900 - label: MolecularActivity - name: P-type potassium:proton transporter activity - - id: GO:0001696 - label: BiologicalProcess - name: gastric acid secretion - - id: MESH:D010437 - label: Disease - name: Peptic ulcer - reference: - - https://go.drugbank.com/drugs/DB00736#mechanism-of-action - - https://en.wikipedia.org/wiki/Esomeprazole - - https://en.wikipedia.org/wiki/Omeprazole#Mechanism_of_action - comment: Esomeprazole is the s-isomer of Omeprazole, both are a proton pump inhibitor class of drug and the mechanism of action for both is similar. Weve annotated the path for the S isomer only as it seems this isomer is metabolized more slowly than omeprazole and therefore it will act for longer and more effectively (https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2036.17.s1.1.x). This disease is denoted as Peptic reflux disease in the original file. -- directed: true - graph: - _id: DB06742_MESH_D010612_1 - disease: Pharyngitis - disease_mesh: MESH:D010612 - drug: ambroxol - drug_mesh: MESH:D000551 - drugbank: DB:DB06742 - links: - - key: negatively regulates - source: MESH:D000551 - target: GO:0038060 - - key: positively correlated with - source: GO:0038060 - target: GO:0006954 - - key: positively correlated with - source: GO:0006954 - target: HP:0033050 - - key: negatively regulates - source: MESH:D000551 - target: Pfam:PF06512 - - key: positively correlated with - source: Pfam:PF06512 - target: GO:0006954 - - key: increases abundance of - source: GO:0038060 - target: UBERON:0016552 - - key: positively correlated with - source: UBERON:0016552 - target: HP:0031602 - - key: positively correlated with - source: HP:0031602 - target: HP:0033050 - - key: positively correlated with - source: Pfam:PF06512 - target: HP:0012531 - - key: positively correlated with - source: HP:0012531 - target: HP:0033050 - - key: manifestation of - source: HP:0033050 - target: MESH:D010612 - multigraph: true - nodes: - - id: MESH:D000551 - label: Drug - name: ambroxol - - id: GO:0038060 - label: BiologicalProcess - name: nitric oxide-cGMP-mediated signaling pathway - - id: HP:0012531 - label: PhenotypicFeature - name: Pain - - id: UBERON:0016552 - label: GrossAnatomicalStructure - name: phlegm - - id: HP:0031602 - label: PhenotypicFeature - name: Abnormal mucociliary clearance - - id: Pfam:PF06512 - label: GeneFamily - name: Sodium ion transport-associated - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: HP:0033050 - label: PhenotypicFeature - name: Pharyngalgia - - id: MESH:D010612 - label: Disease - name: Pharyngitis - reference: - - https://en.wikipedia.org/wiki/Ambroxol#Mechanism_of_action - - https://go.drugbank.com/drugs/DB06742#mechanism-of-action - - https://pubmed.ncbi.nlm.nih.gov/28937232/ - - https://en.wikipedia.org/wiki/Sore_throat#Diagnosis - comment: The disease is also known as Sore throat symptom as per the original file. -- directed: true - graph: - _id: DB06212_MESH_D007010_1 - disease: Hyponatremia - disease_mesh: MESH:D007010 - drug: tolvaptan - drug_mesh: MESH:C116664 - drugbank: DB:DB06212 - links: - - key: negatively regulates - source: MESH:C116664 - target: UniProt:P30518 - - key: participates in - source: UniProt:P30518 - target: REACT:R-HSA-432040 - - key: positively regulates - source: REACT:R-HSA-432040 - target: GO:0070295 - - key: positively correlated with - source: GO:0070295 - target: MESH:D007010 - multigraph: true - nodes: - - id: MESH:C116664 - label: Drug - name: tolvaptan - - id: UniProt:P30518 - label: Protein - name: Vasopressin V2 receptor - - id: REACT:R-HSA-432040 - label: Pathway - name: Vasopressin regulates renal water homeostasis via Aquaporins - - id: GO:0070295 - label: BiologicalProcess - name: renal water absorption - - id: MESH:D007010 - label: Disease - name: Hyponatremia - reference: - - https://go.drugbank.com/drugs/DB06212#mechanism-of-action - - https://pubmed.ncbi.nlm.nih.gov/20868352/ - - https://en.wikipedia.org/wiki/Vasopressin_receptor_antagonist - comment: Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption. There are different types of hyponatremia, and medications like tolvaptan should only be used in those patients with high volume or normal volume hyponatremia (https://en.wikipedia.org/wiki/Hyponatremia#Medications). -- directed: true - graph: - _id: DB06212_MESH_D007177_1 - disease: Inappropriate ADH Syndrome - disease_mesh: MESH:D007177 - drug: tolvaptan - drug_mesh: MESH:C116664 - drugbank: DB:DB06212 - links: - - key: negatively regulates - source: MESH:C116664 - target: UniProt:P30518 - - key: participates in - source: UniProt:P30518 - target: REACT:R-HSA-432040 - - key: positively regulates - source: REACT:R-HSA-432040 - target: GO:0070295 - - key: positively correlated with - source: GO:0070295 - target: MESH:D007177 - multigraph: true - nodes: - - id: MESH:C116664 - label: Drug - name: tolvaptan - - id: UniProt:P30518 - label: Protein - name: Vasopressin V2 receptor - - id: REACT:R-HSA-432040 - label: Pathway - name: Vasopressin regulates renal water homeostasis via Aquaporins - - id: GO:0070295 - label: BiologicalProcess - name: renal water absorption - - id: MESH:D007177 - label: Disease - name: Inappropriate ADH Syndrome - alt_names: - - Syndrome of Inappropriate ADH Secretion, SIADH - reference: - - https://go.drugbank.com/drugs/DB06212#mechanism-of-action - - https://pubmed.ncbi.nlm.nih.gov/20868352/ - - https://en.wikipedia.org/wiki/Vasopressin_receptor_antagonist - - https://en.wikipedia.org/wiki/Syndrome_of_inappropriate_antidiuretic_hormone_secretion#Treatment - comment: This disease is also known as Syndrome of inappropriate vasopressin secretion as per the original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption. -- directed: true - graph: - _id: DB06212_MESH_D016891_1 - disease: Polycystic Kidney, Autosomal Dominant - disease_mesh: MESH:D016891 - drug: tolvaptan - drug_mesh: MESH:C116664 - drugbank: DB:DB06212 - links: - - key: negatively regulates - source: MESH:C116664 - target: UniProt:P30518 - - key: participates in - source: UniProt:P30518 - target: REACT:R-HSA-418555 - - key: increases abundance of - source: REACT:R-HSA-418555 - target: CHEBI:17489 - - key: positively correlated with - source: CHEBI:17489 - target: GO:0008283 - - key: positively correlated with - source: CHEBI:17489 - target: HP:0000107 - - key: manifestation of - source: HP:0000107 - target: MESH:D016891 - - key: positively correlated with - source: GO:0008283 - target: MESH:D016891 - multigraph: true - nodes: - - id: MESH:C116664 - label: Drug - name: tolvaptan - - id: UniProt:P30518 - label: Protein - name: Vasopressin V2 receptor - - id: REACT:R-HSA-418555 - label: Pathway - name: G alpha (s) signalling events - - id: CHEBI:17489 - label: ChemicalSubstance - name: 3,5-cyclic AMP - - id: HP:0000107 - label: PhenotypicFeature - name: Renal cyst - - id: GO:0008283 - label: BiologicalProcess - name: cell population proliferation - - id: MESH:D016891 - label: Disease - name: Polycystic Kidney, Autosomal Dominant - reference: - - https://go.drugbank.com/drugs/DB06212#mechanism-of-action - - https://pubmed.ncbi.nlm.nih.gov/20868352/ - - https://en.wikipedia.org/wiki/Autosomal_dominant_polycystic_kidney_disease#Aquaretic_medication - - https://en.wikipedia.org/wiki/Vasopressin_receptor_antagonist#Polycystic_kidney_disease - comment: This disease is also known as Polycystic kidney disease adult type as per the original file. Tolvaptan is also known as aquaretic (https://en.wikipedia.org/wiki/Aquaretic). Note that hyponatremia corresponds to the state where water content is relatively large for the sodium content available (https://pubmed.ncbi.nlm.nih.gov/19322975/), which is possibly due to increased water reabsorption. -- directed: true - graph: - _id: DB00810_MESH_D010300_1 - disease: Parkinson's disease - disease_mesh: MESH:D010300 - drug: biperiden - drug_mesh: MESH:D001712 - drugbank: DB:DB00810 - links: - - key: negatively regulates - source: MESH:D001712 - target: UniProt:P11229 - - key: positively regulates - source: UniProt:P11229 - target: GO:0007271 - - key: positively correlated with - source: GO:0007271 - target: HP:0100022 - - key: manifestation of - source: HP:0100022 - target: MESH:D010300 - multigraph: true - nodes: - - id: MESH:D001712 - label: Drug - name: biperiden - alt_ids: - - MESH:C036432 - - id: UniProt:P11229 - label: Protein - name: Muscarinic acetylcholine receptor M1 - - id: GO:0007271 - label: BiologicalProcess - name: synaptic transmission, cholinergic - - id: HP:0100022 - label: PhenotypicFeature - name: Abnormality of movement - - id: MESH:D010300 - label: Disease - name: Parkinson's disease - reference: https://go.drugbank.com/drugs/DB00810#mechanism-of-action - comment: In Parkinson's disease, there is imbalance between levels of acetylcholine and dopamine, where increased levels of acetylcholine and degeneration of dopaminergic pathways are observed. Therefore, muscarinic antagonists such as biperiden block central cholinergic activity and balancing out neurotransmitters in the brain (https://en.wikipedia.org/wiki/Muscarinic_antagonist#Effects). Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/). -- directed: true - graph: - _id: DB00810_MESH_D010301_1 - disease: Parkinson Disease, Postencephalitic - disease_mesh: MESH:D010301 - drug: biperiden - drug_mesh: MESH:D001712 - drugbank: DB:DB00810 - links: - - key: negatively regulates - source: MESH:D001712 - target: UniProt:P11229 - - key: positively regulates - source: UniProt:P11229 - target: GO:0007271 - - key: positively correlated with - source: GO:0007271 - target: HP:0100022 - - key: positively correlated with - source: HP:0100022 - target: HP:0001300 - - key: manifestation of - source: HP:0001300 - target: MESH:D010301 - multigraph: true - nodes: - - id: MESH:D001712 - label: Drug - name: biperiden - alt_ids: - - MESH:C036432 - - id: UniProt:P11229 - label: Protein - name: Muscarinic acetylcholine receptor M1 - - id: GO:0007271 - label: BiologicalProcess - name: synaptic transmission, cholinergic - - id: HP:0100022 - label: PhenotypicFeature - name: Abnormality of movement - - id: HP:0001300 - label: PhenotypicFeature - name: Parkinsonism - - id: MESH:D010301 - label: Disease - name: Parkinson Disease, Postencephalitic - reference: https://go.drugbank.com/drugs/DB00810#mechanism-of-action - comment: The disease is denoted as Postencephalitic parkinsonism in the original file. This disease is believed to be caused by a viral infection, leading to clinical parkinsonism (https://en.wikipedia.org/wiki/Postencephalitic_parkinsonism) and anti-Parkinson drugs may be helpful in treating the symptoms (https://en.wikipedia.org/wiki/Encephalitis_lethargica). For example, muscarinic antagonists can allow dopamine levels to rebalance, which can help relieve some Parkinsonian symptoms e.g. involuntary movements. Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/). -- directed: true - graph: - _id: DB00810_MESH_D020734_1 - disease: Parkinsonian Disorders - disease_mesh: MESH:D020734 - drug: biperiden - drug_mesh: MESH:D001712 - drugbank: DB:DB00810 - links: - - key: negatively regulates - source: MESH:D001712 - target: UniProt:P11229 - - key: positively regulates - source: UniProt:P11229 - target: GO:0007271 - - key: positively correlated with - source: GO:0007271 - target: HP:0100022 - - key: manifestation of - source: HP:0100022 - target: MESH:D020734 - multigraph: true - nodes: - - id: MESH:D001712 - label: Drug - name: biperiden - alt_ids: - - MESH:C036432 - - id: UniProt:P11229 - label: Protein - name: Muscarinic acetylcholine receptor M1 - - id: GO:0007271 - label: BiologicalProcess - name: synaptic transmission, cholinergic - - id: HP:0100022 - label: PhenotypicFeature - name: Abnormality of movement - - id: MESH:D020734 - label: Disease - name: Parkinsonian Disorders - reference: - - https://go.drugbank.com/drugs/DB00810#mechanism-of-action - - https://en.wikipedia.org/wiki/Muscarinic_antagonist#Effects - comment: The disease is also known as Parkinsonism as per the original file. Muscarinic antagonists can allow dopamine levels to rebalance, which can help relieve some Parkinsonian symptoms e.g. involuntary movements. Anticholinergic drugs may also be prescribed to improve bladder dysfunction (https://pubmed.ncbi.nlm.nih.gov/20370804/). -- directed: true - graph: - _id: DB00810_MESH_D001480_1 - disease: Basal Ganglia Diseases - disease_mesh: MESH:D001480 - drug: biperiden - drug_mesh: MESH:D001712 - drugbank: DB:DB00810 - links: - - key: negatively regulates - source: MESH:D001712 - target: UniProt:P11229 - - key: positively regulates - source: UniProt:P11229 - target: GO:0007271 - - key: positively correlated with - source: GO:0007271 - target: HP:0002071 - - key: manifestation of - source: HP:0002071 - target: MESH:D001480 - multigraph: true - nodes: - - id: MESH:D001712 - label: Drug - name: biperiden - alt_ids: - - MESH:C036432 - - id: UniProt:P11229 - label: Protein - name: Muscarinic acetylcholine receptor M1 - - id: GO:0007271 - label: BiologicalProcess - name: synaptic transmission, cholinergic - - id: HP:0002071 - label: PhenotypicFeature - name: Abnormality of extrapyramidal motor function - - id: MESH:D001480 - label: Disease - name: Basal Ganglia Diseases - reference: - - https://go.drugbank.com/drugs/DB00810#mechanism-of-action - - https://en.wikipedia.org/wiki/Muscarinic_antagonist#Effects - - https://en.wikipedia.org/wiki/Extrapyramidal_symptoms#Treatment - comment: The disease is also known as Extrapyramidal disease as per the original file. -- directed: true - graph: - _id: DB00205_MESH_D008288_1 - disease: Malaria - disease_mesh: MESH:D008288 - drug: pyrimethamine - drug_mesh: MESH:D011739 - drugbank: DB:DB00205 - links: - - key: negatively regulates - source: MESH:D011739 - target: UniProt:P13922 - - key: positively regulates - source: UniProt:P13922 - target: GO:0046654 - - key: positively correlated with - source: GO:0046654 - target: GO:0006221 - - key: positively correlated with - source: GO:0046654 - target: GO:0019363 - - key: positively correlated with - source: GO:0006221 - target: GO:0000280 - - key: positively correlated with - source: GO:0019363 - target: GO:0000280 - - key: in taxon - source: GO:0000280 - target: NCBITaxon:5839 - - key: causes - source: NCBITaxon:5839 - target: MESH:D008288 - multigraph: true - nodes: - - id: MESH:D011739 - label: Drug - name: pyrimethamine - - id: UniProt:P13922 - label: Protein - name: Bifunctional dihydrofolate reductase-thymidylate synthase - - id: GO:0046654 - label: BiologicalProcess - name: tetrahydrofolate biosynthetic process - - id: GO:0006221 - label: BiologicalProcess - name: pyrimidine nucleotide biosynthetic process - - id: GO:0019363 - label: BiologicalProcess - name: pyridine nucleotide biosynthetic process - - id: GO:0000280 - label: BiologicalProcess - name: nuclear division - - id: NCBITaxon:5839 - label: OrganismTaxon - name: Plasmodium falciparum K1 - - id: MESH:D008288 - label: Disease - name: Malaria - reference: - - https://go.drugbank.com/drugs/DB00205#mechanism-of-action - - https://www.ebi.ac.uk/chembl/target_report_card/CHEMBL1939/ -- directed: true - graph: - _id: DB00205_MESH_D014123_1 - disease: Toxoplasmosis - disease_mesh: MESH:D014123 - drug: pyrimethamine - drug_mesh: MESH:D011739 - drugbank: DB:DB00205 - links: - - key: negatively regulates - source: MESH:D011739 - target: Pfam:PF00186 - - key: positively regulates - source: Pfam:PF00186 - target: GO:0046654 - - key: positively correlated with - source: GO:0046654 - target: GO:0006221 - - key: positively correlated with - source: GO:0046654 - target: GO:0019363 - - key: positively correlated with - source: GO:0006221 - target: GO:0000280 - - key: positively correlated with - source: GO:0019363 - target: GO:0000280 - - key: in taxon - source: GO:0000280 - target: NCBITaxon:5811 - - key: causes - source: NCBITaxon:5811 - target: MESH:D014123 - multigraph: true - nodes: - - id: MESH:D011739 - label: Drug - name: pyrimethamine - - id: Pfam:PF00186 - label: GeneFamily - name: Dihydrofolate reductase - - id: GO:0046654 - label: BiologicalProcess - name: tetrahydrofolate biosynthetic process - - id: GO:0006221 - label: BiologicalProcess - name: pyrimidine nucleotide biosynthetic process - - id: GO:0019363 - label: BiologicalProcess - name: pyridine nucleotide biosynthetic process - - id: GO:0000280 - label: BiologicalProcess - name: nuclear division - - id: NCBITaxon:5811 - label: OrganismTaxon - name: Toxoplasma gondii - - id: MESH:D014123 - label: Disease - name: Toxoplasmosis - reference: - - https://go.drugbank.com/drugs/DB00205#mechanism-of-action - - https://www.ebi.ac.uk/chembl/target_report_card/CHEMBL1939/ -- directed: true - graph: - _id: DB00867_MESH_D007752_1 - disease: Premature labor - disease_mesh: MESH:D007752 - drug: ritodrine - drug_mesh: MESH:D012312 - drugbank: DB:DB00867 - links: - - key: positively regulates - source: MESH:D012312 - target: UniProt:P07550 - - key: positively regulates - source: UniProt:P07550 - target: GO:0044558 - - key: negatively correlated with - source: GO:0044558 - target: MESH:D007752 - multigraph: true - nodes: - - id: MESH:D012312 - label: Drug - name: ritodrine - - id: UniProt:P07550 - label: Protein - name: Beta-2 adrenergic receptor - - id: GO:0044558 - label: BiologicalProcess - name: uterine smooth muscle relaxation - - id: MESH:D007752 - label: Disease - name: Premature labor - reference: - - https://go.drugbank.com/drugs/DB00867#mechanism-of-action - - https://en.wikipedia.org/wiki/Ritodrine - comment: The drug is no longer FDA approved (https://en.wikipedia.org/wiki/Tocolytic#Types_of_agents). -- directed: true - graph: - _id: DB00634_MESH_D000562_1 - disease: Amebic infection - disease_mesh: MESH:D000562 - drug: sulfacetamide - drug_mesh: MESH:D013409 - drugbank: DB:DB00634 - links: - - key: negatively regulates - source: MESH:D013409 - target: GO:0006954 - - key: caused by - source: GO:0006954 - target: MESH:D000562 - multigraph: true - nodes: - - id: MESH:D013409 - label: Drug - name: sulfacetamide - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D000562 - label: Disease - name: Amebic infection - reference: https://go.drugbank.com/drugs/DB00634#mechanism-of-action - comment: There seems to be no evidence linking sulfacetamide as treatment for Amebic infection. Sulfacetamide is an antibacterial type of drug (https://www.kegg.jp/entry/D05947) and it seems the drug has some anti-inflammatory role. Since the disease could lead to inflammation and ulceration of the colon perhaps there could be an anti-inflammation hypothesis but the drug is mainly available as eye drops and lotions (https://en.wikipedia.org/wiki/Sulfacetamide#Available_forms), and therefore unavailable to treat the intestinal tract in such formats. Note there are few amoeba species that may cause skin or eye issues (https://en.wikipedia.org/wiki/Acanthamoeba_keratitis), in which case sulfacetamide could potentially be an indication, albeit no evidence to prove this assumption has been found in databases or literature. -- directed: true - graph: - _id: DB08922_MESH_D012559_1 - disease: Schizophrenia - disease_mesh: MESH:D012559 - drug: perospirone - drug_mesh: MESH:C065533 - drugbank: DB:DB08922 - links: - - key: increases activity of - source: MESH:C065533 - target: UniProt:P08908 - - key: decreases activity of - source: MESH:C065533 - target: UniProt:P14416 - - key: decreases activity of - source: MESH:C065533 - target: UniProt:P28223 - - key: negatively correlated with - source: UniProt:P08908 - target: HP:0000739 - - key: positively regulates - source: UniProt:P28223 - target: GO:0014046 - - key: positively regulates - source: UniProt:P28223 - target: GO:0014047 - - key: positively correlated with - source: GO:0014047 - target: GO:0004952 - - key: positively correlated with - source: GO:0004952 - target: HP:0000709 - - key: positively regulates - source: UniProt:P14416 - target: GO:0014046 - - key: increases abundance of - source: GO:0014046 - target: CHEBI:18243 - - key: located in - source: CHEBI:18243 - target: UBERON:0001910 - - key: correlated with - source: UBERON:0001910 - target: HP:0000709 - - key: positively correlated with - source: HP:0000709 - target: MESH:D012559 - - key: located in - source: CHEBI:18243 - target: UBERON:0009834 - - key: correlated with - source: UBERON:0009834 - target: HP:0100543 - - key: correlated with - source: UBERON:0009834 - target: HP:0030213 - - key: correlated with - source: UBERON:0009834 - target: HP:0012154 - - key: correlated with - source: UBERON:0009834 - target: HP:0002465 - - key: correlated with - source: UBERON:0009834 - target: HP:0000741 - - key: manifestation of - source: HP:0100543 - target: MESH:D012559 - - key: manifestation of - source: HP:0030213 - target: MESH:D012559 - - key: manifestation of - source: HP:0012154 - target: MESH:D012559 - - key: manifestation of - source: HP:0002465 - target: MESH:D012559 - - key: manifestation of - source: HP:0000741 - target: MESH:D012559 - - key: manifestation of - source: HP:0000739 - target: MESH:D012559 - multigraph: true - nodes: - - id: MESH:C065533 - label: Drug - name: perospirone - - id: UniProt:P28223 - label: Protein - name: 5-hydroxytryptamine receptor 2A - - id: UniProt:P14416 - label: Protein - name: D(2) dopamine receptor - - id: UniProt:P08908 - label: Protein - name: 5-hydroxytryptamine receptor 1A - - id: GO:0014046 - label: BiologicalProcess - name: dopamine secretion - - id: GO:0014047 - label: BiologicalProcess - name: glutamate secretion - - id: GO:0004952 - label: MolecularActivity - name: dopamine neurotransmitter receptor activity - - id: CHEBI:18243 - label: ChemicalSubstance - name: dopamine - - id: UBERON:0009834 - label: GrossAnatomicalStructure - name: dorsolateral prefrontal cortex - - id: UBERON:0001910 - label: GrossAnatomicalStructure - name: medial forebrain bundle - - id: HP:0100543 - label: PhenotypicFeature - name: Cognitive impairment - - id: HP:0030213 - label: PhenotypicFeature - name: Emotional blunting - - id: HP:0012154 - label: PhenotypicFeature - name: Anhedonia - - id: HP:0002465 - label: PhenotypicFeature - name: Poor speech - - id: HP:0000741 - label: PhenotypicFeature - name: Apathy - - id: HP:0000709 - label: PhenotypicFeature - name: Psychosis - - id: HP:0000739 - label: PhenotypicFeature - name: Anxiety - - id: MESH:D012559 - label: Disease - name: Schizophrenia - reference: - - https://go.drugbank.com/drugs/DB08922#mechanism-of-action - - https://en.wikipedia.org/wiki/Antipsychotic#Mechanism_of_action - - https://en.wikipedia.org/wiki/Mesolimbic_pathway#Relation_to_neurological_and_psychological_disorders - - https://en.wikipedia.org/wiki/Schizophrenia#Signs_and_symptoms - - https://en.wikipedia.org/wiki/Dopaminergic_pathways#Pathways - - https://en.wikipedia.org/wiki/Mesocortical_pathway - - https://en.wikipedia.org/wiki/Dopamine_hypothesis_of_schizophrenia#Introduction - - https://en.wikipedia.org/wiki/Atypical_antipsychotic#Pharmacology - - https://en.wikipedia.org/wiki/5-HT1A_receptor#Function - comment: The action of the drug on 5-HT2 receptors is of an inverse agonist (https://en.wikipedia.org/wiki/Inverse_agonist). The dopamine neurons are located in the mesolimbic dopaminergic system (BTO:0005591), which is a component pathway of the medial forebrain bundle (UBERON:0001910)(https://en.wikipedia.org/wiki/Medial_forebrain_bundle#Anatomy). -- directed: true - graph: - _id: DB00602_MESH_D009855_2 - disease: Onchocerciasis - disease_mesh: MESH:D009855 - drug: ivermectin - drug_mesh: MESH:D007559 - drugbank: DB:DB00602 - links: - - key: increases activity of - source: MESH:D007559 - target: InterPro:IPR015680 - - key: positively regulates - source: InterPro:IPR015680 - target: GO:0005254 - - key: positively correlated with - source: GO:0005254 - target: GO:0060081 - - key: negatively regulates - source: GO:0060081 - target: GO:0099565 - - key: in taxon - source: GO:0099565 - target: NCBITaxon:6282 - - key: causes - source: NCBITaxon:6282 - target: MESH:D009855 - multigraph: true - nodes: - - id: MESH:D007559 - label: Drug - name: ivermectin - - id: InterPro:IPR015680 - label: GeneFamily - name: Glutamate-Gated Chloride Channel - - id: GO:0005254 - label: MolecularActivity - name: chloride channel activity - - id: GO:0060081 - label: BiologicalProcess - name: membrane hyperpolarization - - id: GO:0099565 - label: BiologicalProcess - name: chemical synaptic transmission, postsynaptic - - id: NCBITaxon:6282 - label: OrganismTaxon - name: Onchocerca volvulus - - id: MESH:D009855 - label: Disease - name: Onchocerciasis - reference: - - https://en.wikipedia.org/wiki/Ivermectin#Mechanism_of_action - - https://go.drugbank.com/drugs/DB00602#mechanism-of-action - - https://en.wikipedia.org/wiki/Onchocerciasis#Ivermectin - comment: Disease is also known as Infection by Onchocerca volvulus as per the original file. -- directed: true - graph: - _id: DB00602_MESH_D013322_1 - disease: Strongyloidiasis - disease_mesh: MESH:D013322 - drug: ivermectin - drug_mesh: MESH:D007559 - drugbank: DB:DB00602 - links: - - key: increases activity of - source: MESH:D007559 - target: InterPro:IPR015680 - - key: positively regulates - source: InterPro:IPR015680 - target: GO:0005254 - - key: positively correlated with - source: GO:0005254 - target: GO:0060081 - - key: negatively regulates - source: GO:0060081 - target: GO:0099565 - - key: in taxon - source: GO:0099565 - target: NCBITaxon:6248 - - key: causes - source: NCBITaxon:6248 - target: MESH:D013322 - multigraph: true - nodes: - - id: MESH:D007559 - label: Drug - name: ivermectin - - id: InterPro:IPR015680 - label: GeneFamily - name: Glutamate-Gated Chloride Channel - - id: GO:0005254 - label: MolecularActivity - name: chloride channel activity - - id: GO:0060081 - label: BiologicalProcess - name: membrane hyperpolarization - - id: GO:0099565 - label: BiologicalProcess - name: chemical synaptic transmission, postsynaptic - - id: NCBITaxon:6248 - label: OrganismTaxon - name: Strongyloides stercoralis - - id: MESH:D013322 - label: Disease - name: Strongyloidiasis - reference: - - https://en.wikipedia.org/wiki/Ivermectin#Mechanism_of_action - - https://go.drugbank.com/drugs/DB00602#mechanism-of-action - - https://en.wikipedia.org/wiki/Strongyloidiasis#Treatment - comment: Disease is denoted Infection by Strongyloides in the original file. -- directed: true - graph: - _id: DB01014_MESH_D003093_1 - disease: Ulcerative colitis - disease_mesh: MESH:D003093 - drug: balsalazide - drug_mesh: MESH:C038637 - drugbank: DB:DB01014 - links: - - key: has metabolite - source: MESH:C038637 - target: MESH:D019804 - - key: decreases activity of - source: MESH:D019804 - target: UniProt:P35354 - - key: decreases activity of - source: MESH:D019804 - target: UniProt:P23219 - - key: decreases activity of - source: MESH:D019804 - target: UniProt:O15111 - - key: decreases activity of - source: MESH:D019804 - target: UniProt:O14920 - - key: positively regulates - source: UniProt:O14920 - target: GO:0007249 - - key: positively regulates - source: UniProt:O15111 - target: GO:0007249 - - key: positively correlated with - source: GO:0007249 - target: GO:0006954 - - key: decreases activity of - source: MESH:D019804 - target: UniProt:P09917 - - key: increases activity of - source: MESH:D019804 - target: UniProt:P37231 - - key: negatively correlated with - source: UniProt:P37231 - target: REACT:R-HSA-1169091 - - key: positively correlated with - source: REACT:R-HSA-1169091 - target: GO:0006954 - - key: participates in - source: UniProt:P09917 - target: REACT:R-HSA-2142691 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: positively correlated with - source: REACT:R-HSA-2162123 - target: GO:0006954 - - key: positively correlated with - source: REACT:R-HSA-2142691 - target: GO:0006954 - - key: located in - source: GO:0006954 - target: UBERON:0001052 - - key: located in - source: GO:0006954 - target: UBERON:0001155 - - key: location of - source: UBERON:0001052 - target: MESH:D003093 - - key: location of - source: UBERON:0001155 - target: MESH:D003093 - multigraph: true - nodes: - - id: MESH:C038637 - label: Drug - name: balsalazide - - id: MESH:D019804 - label: ChemicalSubstance - name: Mesalamine - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: UniProt:P09917 - label: Protein - name: Polyunsaturated fatty acid 5-lipoxygenase - - id: UniProt:P37231 - label: Protein - name: Peroxisome proliferator-activated receptor gamma - - id: UniProt:O15111 - label: Protein - name: Inhibitor of nuclear factor kappa-B kinase subunit alpha - - id: UniProt:O14920 - label: Protein - name: Inhibitor of nuclear factor kappa-B kinase subunit beta - - id: GO:0007249 - label: BiologicalProcess - name: I-kappaB kinase/NF-kappaB signaling - - id: REACT:R-HSA-2142691 - label: Pathway - name: Synthesis of Leukotrienes (LT) and Eoxins (EX) - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: REACT:R-HSA-1169091 - label: Pathway - name: Activation of NF-kappaB in B cells - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: UBERON:0001052 - label: GrossAnatomicalStructure - name: rectum - - id: UBERON:0001155 - label: GrossAnatomicalStructure - name: colon - - id: MESH:D003093 - label: Disease - name: Ulcerative colitis - reference: - - https://go.drugbank.com/drugs/DB01014#mechanism-of-action - - https://go.drugbank.com/drugs/DB00244#mechanism-of-action - - https://pubmed.ncbi.nlm.nih.gov/20151072/ - - https://go.drugbank.com/drugs/DB00244#BE0004655 - - https://en.wikipedia.org/wiki/CHUK#Clinical_significance - - https://en.wikipedia.org/wiki/IKK2#Clinical_significance - comment: Balsalazide is a prodrug and it releases mesalazine in the large intestine, the active site of ulcerative colitis (https://en.wikipedia.org/wiki/Balsalazide https://en.wikipedia.org/wiki/Mesalazine#Chemistry). -- directed: true - graph: - _id: DB00619_MESH_D015466_1 - disease: Chronic phase chronic myeloid leukemia - disease_mesh: MESH:D015466 - drug: imatinib - drug_mesh: MESH:D000068877 - drugbank: DB:DB00619 - links: - - key: decreases activity of - source: MESH:D000068877 - target: MESH:D016044 - - key: positively regulates - source: MESH:D016044 - target: GO:0004674 - - key: positively correlated with - source: GO:0004674 - target: GO:0007266 - - key: positively correlated with - source: GO:0007266 - target: GO:0008283 - - key: negatively correlated with - source: GO:0007266 - target: GO:0006915 - - key: positively correlated with - source: GO:0008283 - target: MESH:D015466 - - key: negatively correlated with - source: GO:0006915 - target: MESH:D015466 - multigraph: true - nodes: - - id: MESH:D000068877 - label: Drug - name: imatinib - - id: MESH:D016044 - label: Protein - name: Fusion Proteins, bcr-abl - - id: GO:0004674 - label: MolecularActivity - name: protein serine/threonine kinase activity - - id: GO:0007266 - label: BiologicalProcess - name: Rho protein signal transduction - - id: GO:0008283 - label: BiologicalProcess - name: cell population proliferation - - id: GO:0006915 - label: BiologicalProcess - name: apoptotic process - - id: MESH:D015466 - label: Disease - name: Chronic phase chronic myeloid leukemia - reference: - - https://www.cancer.gov/publications/dictionaries/cancer-drug/def/imatinib-mesylate - - https://go.drugbank.com/drugs/DB00619#mechanism-of-action - - https://en.wikipedia.org/wiki/Imatinib#Chronic_myelogenous_leukemia - comment: Imatinib also modulates other protein targets and is an indication for other malignancies (https://en.wikipedia.org/wiki/Imatinib#Medical_uses). -- directed: true - graph: - _id: DB00619_MESH_C580364_1 - disease: Pdgfra-Associated Chronic Eosinophilic Leukemia - disease_mesh: MESH:C580364 - drug: imatinib - drug_mesh: MESH:D000068877 - drugbank: DB:DB00619 - links: - - key: decreases activity of - source: MESH:D000068877 - target: UniProt:P16234 - - key: positively regulates - source: UniProt:P16234 - target: GO:0048008 - - key: positively correlated with - source: GO:0048008 - target: GO:0008283 - - key: positively correlated with - source: GO:0008283 - target: HP:0001880 - - key: manifestation of - source: HP:0001880 - target: MESH:C580364 - multigraph: true - nodes: - - id: MESH:D000068877 - label: Drug - name: imatinib - - id: UniProt:P16234 - label: Protein - name: Platelet-derived growth factor receptor alpha - - id: GO:0048008 - label: BiologicalProcess - name: platelet-derived growth factor receptor signaling pathway - - id: GO:0008283 - label: BiologicalProcess - name: cell population proliferation - - id: HP:0001880 - label: PhenotypicFeature - name: Eosinophilia - - id: MESH:C580364 - label: Disease - name: Pdgfra-Associated Chronic Eosinophilic Leukemia - reference: - - https://www.cancer.gov/publications/dictionaries/cancer-drug/def/imatinib-mesylate - - https://go.drugbank.com/drugs/DB00619#BE0000205 - - https://go.drugbank.com/drugs/DB00619#BE0000852 - - https://en.wikipedia.org/wiki/Chronic_eosinophilic_leukemia - - https://en.wikipedia.org/wiki/Eosinophilia#Chronic_eosinophilic_leukemia_(NOS) - - https://en.wikipedia.org/wiki/Imatinib#Other - comment: The disease is also known as Chronic eosinophilic leukemia as per the original file. The malignancy is driven by FIP1L1-PDGFRA fusion genes (https://en.wikipedia.org/wiki/FIP1L1#FIP1L1-PDGFRA_fusion_genes). -- directed: true - graph: - _id: DB00619_MESH_D017681_1 - disease: Hypereosinophilic Syndrome - disease_mesh: MESH:D017681 - drug: imatinib - drug_mesh: MESH:D000068877 - drugbank: DB:DB00619 - links: - - key: decreases activity of - source: MESH:D000068877 - target: UniProt:P16234 - - key: positively regulates - source: UniProt:P16234 - target: GO:0008283 - - key: positively correlated with - source: GO:0008283 - target: HP:0001880 - - key: manifestation of - source: HP:0001880 - target: MESH:D017681 - multigraph: true - nodes: - - id: MESH:D000068877 - label: Drug - name: imatinib - - id: UniProt:P16234 - label: Protein - name: Platelet-derived growth factor receptor alpha - - id: GO:0008283 - label: BiologicalProcess - name: cell population proliferation - - id: HP:0001880 - label: PhenotypicFeature - name: Eosinophilia - - id: MESH:D017681 - label: Disease - name: Hypereosinophilic Syndrome - reference: - - https://www.cancer.gov/publications/dictionaries/cancer-drug/def/imatinib-mesylate - - https://go.drugbank.com/drugs/DB00619#BE0000205 - - https://go.drugbank.com/drugs/DB00619#BE0000852 - - https://en.wikipedia.org/wiki/Imatinib#Other - comment: The disease is also known as Idiopathic hypereosinophilic syndrome as per the original file. Treatment with imatinib is indicated for patients who have a PDGFRA-FIP1L1 chimera, where PDGR, a tyrosine kinase (https://en.wikipedia.org/wiki/Hypereosinophilic_syndrome#Diagnosis) and an oncogene (https://en.wikipedia.org/wiki/Oncogene#Classification) is fused with FIP1L1, giving rise to a PDGFRA-FIP1L1 chimera. -- directed: true - graph: - _id: DB00619_MESH_D046152_1 - disease: Gastrointestinal stromal tumor - disease_mesh: MESH:D046152 - drug: imatinib - drug_mesh: MESH:D000068877 - drugbank: DB:DB00619 - links: - - key: decreases activity of - source: MESH:D000068877 - target: UniProt:P10721 - - key: decreases activity of - source: MESH:D000068877 - target: UniProt:P16234 - - key: positively regulates - source: UniProt:P16234 - target: GO:0035790 - - key: positively correlated with - source: GO:0035790 - target: GO:0008283 - - key: positively correlated with - source: GO:0035790 - target: MESH:D002470 - - key: positively regulates - source: UniProt:P10721 - target: GO:0038109 - - key: positively correlated with - source: GO:0038109 - target: GO:0008283 - - key: positively correlated with - source: GO:0038109 - target: MESH:D002470 - - key: positively correlated with - source: GO:0038109 - target: GO:0030154 - - key: positively correlated with - source: GO:0008283 - target: MESH:D046152 - - key: positively correlated with - source: MESH:D002470 - target: MESH:D046152 - - key: positively correlated with - source: GO:0030154 - target: MESH:D046152 - multigraph: true - nodes: - - id: MESH:D000068877 - label: Drug - name: imatinib - - id: UniProt:P10721 - label: Protein - name: Mast/stem cell growth factor receptor Kit - - id: UniProt:P16234 - label: Protein - name: Platelet-derived growth factor receptor alpha - - id: GO:0035790 - label: BiologicalProcess - name: platelet-derived growth factor receptor-alpha signaling pathway - - id: GO:0038109 - label: BiologicalProcess - name: Kit signaling pathway - - id: GO:0030154 - label: BiologicalProcess - name: cell differentiation - - id: GO:0008283 - label: BiologicalProcess - name: cell population proliferation - - id: MESH:D002470 - label: BiologicalProcess - name: Cell Survival - - id: MESH:D046152 - label: Disease - name: Gastrointestinal stromal tumor - reference: - - https://www.cancer.gov/publications/dictionaries/cancer-drug/def/imatinib-mesylate - - https://en.wikipedia.org/wiki/Imatinib#Gastrointestinal_stromal_tumors - - https://go.drugbank.com/drugs/DB00619#BE0000453 - - https://go.drugbank.com/drugs/DB00619#BE0000852 - comment: The majority of Gastrointestinal stromal tumor patients have mutations on the KIT or PDGFRA genes (95% of all patients). -- directed: true - graph: - _id: DB00619_MESH_D018223_1 - disease: Dermatofibrosarcoma - disease_mesh: MESH:D018223 - drug: imatinib - drug_mesh: MESH:D000068877 - drugbank: DB:DB00619 - links: - - key: decreases activity of - source: MESH:D000068877 - target: UniProt:P16234 - - key: positively regulates - source: UniProt:P16234 - target: GO:0030154 - - key: positively regulates - source: UniProt:P16234 - target: GO:0008283 - - key: positively regulates - source: UniProt:P16234 - target: MESH:D002470 - - key: positively correlated with - source: GO:0008283 - target: MESH:D018223 - - key: positively correlated with - source: MESH:D002470 - target: MESH:D018223 - - key: positively correlated with - source: GO:0030154 - target: MESH:D018223 - multigraph: true - nodes: - - id: MESH:D000068877 - label: Drug - name: imatinib - - id: UniProt:P16234 - label: Protein - name: Platelet-derived growth factor receptor alpha - - id: GO:0030154 - label: BiologicalProcess - name: cell differentiation - - id: GO:0008283 - label: BiologicalProcess - name: cell population proliferation - - id: MESH:D002470 - label: BiologicalProcess - name: Cell Survival - - id: MESH:D018223 - label: Disease - name: Dermatofibrosarcoma - reference: - - https://www.cancer.gov/publications/dictionaries/cancer-drug/def/imatinib-mesylate - - https://en.wikipedia.org/wiki/Dermatofibrosarcoma_protuberans#Pathophysiology - - https://en.wikipedia.org/wiki/Imatinib#Dermatofibrosarcoma_protuberans_(DFSP) - comment: The majority of dermatofibrosarcoma tumours have two genes fused due to a translocation involving the collagen gene (COL1A1) and the platelet-derived growth factor (PDGF). The latter can be further subdivided giving rise to PDGFA, for example, which is an oncogene. -- directed: true - graph: - _id: DB00661_MESH_D000788_1 - disease: Angina Pectoris, Variant - disease_mesh: MESH:D000788 - drug: verapamil - drug_mesh: MESH:D014700 - drugbank: DB:DB00661 - links: - - key: decreases activity of - source: MESH:D014700 - target: UniProt:Q13936 - - key: positively regulates - source: UniProt:Q13936 - target: GO:0060402 - - key: positively correlated with - source: GO:0060402 - target: GO:0042310 - - key: positively correlated with - source: GO:0042310 - target: HP:0033401 - - key: manifestation of - source: HP:0033401 - target: MESH:D000788 - multigraph: true - nodes: - - id: MESH:D014700 - label: Drug - name: verapamil - - id: UniProt:Q13936 - label: Protein - name: Voltage-dependent L-type calcium channel subunit alpha-1C - - id: GO:0060402 - label: BiologicalProcess - name: calcium ion transport into cytosol - - id: GO:0042310 - label: BiologicalProcess - name: vasoconstriction - - id: HP:0033401 - label: PhenotypicFeature - name: Tissue ischemia - - id: MESH:D000788 - label: Disease - name: Angina Pectoris, Variant - reference: - - https://go.drugbank.com/drugs/DB00661#mechanism-of-action - - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6966/ - - https://en.wikipedia.org/wiki/Verapamil#Mechanism_of_action - - https://en.wikipedia.org/wiki/Antiarrhythmic_agent#Class_IV_agents - - https://en.wikipedia.org/wiki/Variant_angina#Maintenance - comment: The disease is also known as Prinzmetal angina as per the original file. -- directed: true - graph: - _id: DB00661_MESH_D006973_1 - disease: Hypertensive disorder - disease_mesh: MESH:D006973 - drug: verapamil - drug_mesh: MESH:D014700 - drugbank: DB:DB00661 - links: - - key: decreases activity of - source: MESH:D014700 - target: UniProt:Q13936 - - key: positively regulates - source: UniProt:Q13936 - target: GO:0060402 - - key: positively correlated with - source: GO:0060402 - target: GO:0042310 - - key: positively correlated with - source: GO:0042310 - target: HP:0033533 - - key: affects risk for - source: HP:0033533 - target: HP:0032263 - - key: manifestation of - source: HP:0032263 - target: MESH:D006973 - multigraph: true - nodes: - - id: MESH:D014700 - label: Drug - name: verapamil - - id: UniProt:Q13936 - label: Protein - name: Voltage-dependent L-type calcium channel subunit alpha-1C - - id: GO:0060402 - label: BiologicalProcess - name: calcium ion transport into cytosol - - id: GO:0042310 - label: BiologicalProcess - name: vasoconstriction - - id: HP:0033533 - label: PhenotypicFeature - name: Increased cardiac output - - id: HP:0032263 - label: PhenotypicFeature - name: Increased blood pressure - - id: MESH:D006973 - label: Disease - name: Hypertensive disorder - reference: - - https://go.drugbank.com/drugs/DB00661#mechanism-of-action - - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6966/ - - https://en.wikipedia.org/wiki/Verapamil#Mechanism_of_action - - https://en.wikipedia.org/wiki/Antiarrhythmic_agent#Class_IV_agents -- directed: true - graph: - _id: DB00661_MESH_D001281_1 - disease: Atrial fibrillation - disease_mesh: MESH:D001281 - drug: verapamil - drug_mesh: MESH:D014700 - drugbank: DB:DB00661 - links: - - key: decreases activity of - source: MESH:D014700 - target: UniProt:Q13936 - - key: positively regulates - source: UniProt:Q13936 - target: GO:0061337 - - key: positively correlated with - source: GO:0061337 - target: GO:0060047 - - key: positively correlated with - source: GO:0060047 - target: HP:0001692 - - key: manifestation of - source: HP:0001692 - target: MESH:D001281 - multigraph: true - nodes: - - id: MESH:D014700 - label: Drug - name: verapamil - - id: UniProt:Q13936 - label: Protein - name: Voltage-dependent L-type calcium channel subunit alpha-1C - - id: GO:0061337 - label: BiologicalProcess - name: cardiac conduction - - id: GO:0060047 - label: BiologicalProcess - name: heart contraction - - id: HP:0001692 - label: PhenotypicFeature - name: Atrial arrhythmia - - id: MESH:D001281 - label: Disease - name: Atrial fibrillation - reference: - - https://go.drugbank.com/drugs/DB00661#mechanism-of-action - - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6966/ - - https://en.wikipedia.org/wiki/Verapamil#Mechanism_of_action - - https://en.wikipedia.org/wiki/Antiarrhythmic_agent#Class_IV_agents - - https://en.wikipedia.org/wiki/Atrial_fibrillation#Rate_control -- directed: true - graph: - _id: DB00661_MESH_D054058_1 - disease: Acute coronary syndrome - disease_mesh: MESH:D054058 - drug: verapamil - drug_mesh: MESH:D014700 - drugbank: DB:DB00661 - links: - - key: decreases activity of - source: MESH:D014700 - target: UniProt:Q13936 - - key: positively regulates - source: UniProt:Q13936 - target: GO:0060402 - - key: positively correlated with - source: GO:0060402 - target: GO:0042310 - - key: positively correlated with - source: GO:0042310 - target: HP:0033401 - - key: manifestation of - source: HP:0033401 - target: MESH:D054058 - multigraph: true - nodes: - - id: MESH:D014700 - label: Drug - name: verapamil - - id: UniProt:Q13936 - label: Protein - name: Voltage-dependent L-type calcium channel subunit alpha-1C - - id: GO:0060402 - label: BiologicalProcess - name: calcium ion transport into cytosol - - id: GO:0042310 - label: BiologicalProcess - name: vasoconstriction - - id: HP:0033401 - label: PhenotypicFeature - name: Tissue ischemia - - id: MESH:D054058 - label: Disease - name: Acute coronary syndrome - reference: - - https://go.drugbank.com/drugs/DB00661#mechanism-of-action - - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6966/ - - https://en.wikipedia.org/wiki/Verapamil#Mechanism_of_action - - https://en.wikipedia.org/wiki/Antiarrhythmic_agent#Class_IV_agents -- directed: true - graph: - _id: DB00661_MESH_D000787_1 - disease: Angina pectoris - disease_mesh: MESH:D000787 - drug: verapamil - drug_mesh: MESH:D014700 - drugbank: DB:DB00661 - links: - - key: decreases activity of - source: MESH:D014700 - target: UniProt:Q13936 - - key: positively regulates - source: UniProt:Q13936 - target: GO:0060402 - - key: positively correlated with - source: GO:0060402 - target: GO:0042310 - - key: positively correlated with - source: GO:0042310 - target: HP:0033401 - - key: manifestation of - source: HP:0033401 - target: MESH:D000787 - multigraph: true - nodes: - - id: MESH:D014700 - label: Drug - name: verapamil - - id: UniProt:Q13936 - label: Protein - name: Voltage-dependent L-type calcium channel subunit alpha-1C - - id: GO:0060402 - label: BiologicalProcess - name: calcium ion transport into cytosol - - id: GO:0042310 - label: BiologicalProcess - name: vasoconstriction - - id: HP:0033401 - label: PhenotypicFeature - name: Tissue ischemia - - id: MESH:D000787 - label: Disease - name: Angina pectoris - reference: - - https://go.drugbank.com/drugs/DB00661#mechanism-of-action - - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6966/ - - https://en.wikipedia.org/wiki/Verapamil#Mechanism_of_action - - https://en.wikipedia.org/wiki/Antiarrhythmic_agent#Class_IV_agents - - https://en.wikipedia.org/wiki/Angina#Treatment