Merge branch 'main' into dependabot/pip/docker/py/wheel-0.42.0 #484
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| # This set of github actions is used to automatically build the | |
| # docker images for all of the containers we support. The build | |
| # process is quite long as it involves building quite a few | |
| # container images (maybe 20-30). We have considered trying to | |
| # reduce this build time but it's a bit non trivial in our | |
| # current configuration - the obvious q is to, say, detect if | |
| # there are changes to e.g. docker/cuda and only build the cuda | |
| # images in this case. The problem with this is that building the | |
| # cuda images involves building the base python image, so we would | |
| # build that, push it and tag it and then we would end up with a | |
| # situation in which the cuda image is based on a renku-python image | |
| # which has a tag which differs from, say, the r or julia images. | |
| # | |
| # Some solution might be possible which looks at previous commits | |
| # and existing tags on docker images but this is a bit complex and | |
| # probably requires having a clear model of dependencies and how | |
| # they interact and what we're trying to achieve. | |
| # | |
| # It's probbaly worth noting here that the same action is used multiple | |
| # times with multiple input parameters in the `matrix` variable to | |
| # build different versions of the image. | |
| name: Renku Docker Image CI | |
| on: [push] | |
| env: | |
| DOCKER_PREFIX: renku/renkulab | |
| DEFAULT_PYTHON_VERSION: "3.10" | |
| jobs: | |
| lint: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| DOCKERFILE_PATH: | |
| - docker/py/Dockerfile | |
| - docker/r/Dockerfile | |
| - docker/cuda/Dockerfile | |
| - docker/vnc/Dockerfile | |
| - docker/matlab/Dockerfile | |
| - docker/julia/Dockerfile | |
| - docker/batch/Dockerfile | |
| - docker/qgis/Dockerfile | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: hadolint/[email protected] | |
| with: | |
| dockerfile: ${{ matrix.DOCKERFILE_PATH }} | |
| config: .hadolint.yaml | |
| build-py: | |
| needs: lint | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| BASE_PYTHON_VERSION: | |
| - "3.10" | |
| - "3.9" | |
| - "3.8" | |
| steps: | |
| - name: Docker Login | |
| uses: Azure/docker-login@v1 | |
| with: | |
| username: ${{ secrets.RENKU_DOCKER_USERNAME }} | |
| password: ${{ secrets.RENKU_DOCKER_PASSWORD }} | |
| - uses: actions/checkout@v4 | |
| - name: Set up QEMU | |
| uses: docker/[email protected] | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_PREFIX }}-py | |
| tags: | | |
| type=sha,prefix=${{ matrix.BASE_PYTHON_VERSION }}- | |
| - name: Build and load | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| BASE_IMAGE=jupyter/base-notebook:python-${{ matrix.BASE_PYTHON_VERSION }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| context: docker/py | |
| labels: ${{ steps.meta.outputs.labels }} | |
| load: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| provenance: false | |
| - name: Image Acceptance Tests | |
| uses: cypress-io/github-action@v6 | |
| env: | |
| TEST_IMAGE_NAME: ${{ env.DOCKER_PREFIX }}-py:${{ steps.meta.outputs.version }} | |
| TEST_USER_NAME: jovyan | |
| TEST_SPEC: jupyterlab.cy.ts | |
| with: | |
| working-directory: tests | |
| command: npx mocha -r ts-node/register index.ts | |
| # export the default base image for other jobs to use | |
| - name: Build and export | |
| if: matrix.BASE_PYTHON_VERSION == env.DEFAULT_PYTHON_VERSION | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| BASE_IMAGE=jupyter/base-notebook:python-${{ matrix.BASE_PYTHON_VERSION }} | |
| cache-from: type=gha | |
| context: docker/py | |
| labels: ${{ steps.meta.outputs.labels }} | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| provenance: false | |
| build-py-homedir-env: | |
| needs: lint | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| BASE_PYTHON_VERSION: | |
| - "3.10" | |
| - "3.9" | |
| - "3.8" | |
| steps: | |
| - name: Docker Login | |
| uses: Azure/docker-login@v1 | |
| with: | |
| username: ${{ secrets.RENKU_DOCKER_USERNAME }} | |
| password: ${{ secrets.RENKU_DOCKER_PASSWORD }} | |
| - uses: actions/checkout@v4 | |
| - name: Set up QEMU | |
| uses: docker/[email protected] | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_PREFIX }}-py-homedir-envs | |
| tags: | | |
| type=sha,prefix=${{ matrix.BASE_PYTHON_VERSION }}- | |
| type=semver,pattern={{version}},prefix=${{ matrix.BASE_PYTHON_VERSION }}- | |
| type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' && matrix.BASE_PYTHON_VERSION == env.DEFAULT_PYTHON_VERSION }} | |
| - name: Build and load | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| BASE_IMAGE=jupyter/base-notebook:python-${{ matrix.BASE_PYTHON_VERSION }} | |
| CONDA_ENVS_DIRS=/home/jovyan/work/envs | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| context: docker/py | |
| labels: ${{ steps.meta.outputs.labels }} | |
| load: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| provenance: false | |
| - name: Image Acceptance Tests | |
| uses: cypress-io/github-action@v6 | |
| env: | |
| TEST_IMAGE_NAME: ${{ env.DOCKER_PREFIX }}-py-homedir-envs:${{ steps.meta.outputs.version }} | |
| TEST_USER_NAME: jovyan | |
| TEST_SPEC: jupyterlab.cy.ts | |
| with: | |
| working-directory: tests | |
| command: npx mocha -r ts-node/register index.ts | |
| # export the default base image for other jobs to use | |
| - name: Build and export | |
| if: matrix.BASE_PYTHON_VERSION == env.DEFAULT_PYTHON_VERSION | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| BASE_IMAGE=jupyter/base-notebook:python-${{ matrix.BASE_PYTHON_VERSION }} | |
| CONDA_ENVS_DIRS=/home/jovyan/work/envs | |
| cache-from: type=gha | |
| context: docker/py | |
| labels: ${{ steps.meta.outputs.labels }} | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| provenance: false | |
| build-py-multiarch: | |
| needs: build-py | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| BASE_PYTHON_VERSION: | |
| - "3.10" | |
| - "3.9" | |
| - "3.8" | |
| steps: | |
| - name: Docker Login | |
| uses: Azure/docker-login@v1 | |
| with: | |
| username: ${{ secrets.RENKU_DOCKER_USERNAME }} | |
| password: ${{ secrets.RENKU_DOCKER_PASSWORD }} | |
| - uses: actions/checkout@v4 | |
| - name: Set up QEMU | |
| uses: docker/[email protected] | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_PREFIX }}-py | |
| tags: | | |
| type=sha,prefix=${{ matrix.BASE_PYTHON_VERSION }}- | |
| type=semver,pattern={{version}},prefix=${{ matrix.BASE_PYTHON_VERSION }}- | |
| type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' && matrix.BASE_PYTHON_VERSION == env.DEFAULT_PYTHON_VERSION }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: docker/py | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-to: type=gha,mode=max | |
| cache-from: type=gha | |
| build-args: | | |
| BASE_IMAGE=jupyter/base-notebook:python-${{ matrix.BASE_PYTHON_VERSION }} | |
| platforms: linux/amd64,linux/arm64 | |
| provenance: false | |
| build-cuda: | |
| needs: build-py | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| # taken from tensorflow compatibility chart at https://www.tensorflow.org/install/source#gpu | |
| - CUDA_VERSION: "11.2" | |
| EXTRA_LIBRARIES: "" | |
| CUDA_CUDART_PACKAGE: "cuda-cudart-11-2=11.2.152-1" | |
| CUDA_COMPAT_PACKAGE: "cuda-compat-11-2" | |
| LIBCUDNN_PACKAGE: "libcudnn8=8.1.1.33-1+cuda11.2" | |
| - CUDA_VERSION: "11.3" | |
| EXTRA_LIBRARIES: "" | |
| CUDA_CUDART_PACKAGE: "cuda-cudart-11-3=11.3.109-1" | |
| CUDA_COMPAT_PACKAGE: "cuda-compat-11-3" | |
| LIBCUDNN_PACKAGE: "libcudnn8=8.2.1.32-1+cuda11.3" | |
| - CUDA_VERSION: "11.4" | |
| EXTRA_LIBRARIES: "" | |
| CUDA_CUDART_PACKAGE: "cuda-cudart-11-4=11.4.148-1" | |
| CUDA_COMPAT_PACKAGE: "cuda-compat-11-4" | |
| LIBCUDNN_PACKAGE: "libcudnn8=8.2.4.15-1+cuda11.4" | |
| - CUDA_VERSION: "11.5" | |
| EXTRA_LIBRARIES: "" | |
| CUDA_CUDART_PACKAGE: "cuda-cudart-11-5=11.5.117-1" | |
| CUDA_COMPAT_PACKAGE: "cuda-compat-11-5" | |
| LIBCUDNN_PACKAGE: "libcudnn8=8.3.2.44-1+cuda11.5" | |
| - CUDA_VERSION: "11.7" | |
| EXTRA_LIBRARIES: "" | |
| CUDA_CUDART_PACKAGE: "cuda-cudart-11-7=11.7.60-1" | |
| CUDA_COMPAT_PACKAGE: "cuda-compat-11-7" | |
| LIBCUDNN_PACKAGE: "libcudnn8=8.5.0.96-1+cuda11.7" | |
| - CUDA_VERSION: "11.8" | |
| EXTRA_LIBRARIES: "" | |
| CUDA_CUDART_PACKAGE: "cuda-cudart-11-8=11.8.89-1" | |
| CUDA_COMPAT_PACKAGE: "cuda-compat-11-8" | |
| LIBCUDNN_PACKAGE: "libcudnn8=8.6.0.163-1+cuda11.8" | |
| ADD_2204_APT_REPOS: "true" | |
| steps: | |
| - name: Docker Login | |
| uses: Azure/docker-login@v1 | |
| with: | |
| username: ${{ secrets.RENKU_DOCKER_USERNAME }} | |
| password: ${{ secrets.RENKU_DOCKER_PASSWORD }} | |
| - uses: actions/checkout@v4 | |
| - name: Set outputs | |
| id: vars | |
| run: | | |
| sha_short=$(git rev-parse --short HEAD) | |
| echo "sha_short=$sha_short" >> $GITHUB_OUTPUT | |
| echo "renku_base=${DOCKER_PREFIX}-py:${DEFAULT_PYTHON_VERSION}-${sha_short}" >> $GITHUB_OUTPUT | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_PREFIX }}-cuda | |
| tags: | | |
| type=sha,prefix=${{ matrix.CUDA_VERSION }}- | |
| type=semver,pattern={{version}},prefix=${{ matrix.CUDA_VERSION }}- | |
| type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' && matrix.CUDA_VERSION == '11.7' }} | |
| - name: Build and load | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| RENKU_BASE=${{ steps.vars.outputs.renku_base }} | |
| CUDA_COMPAT_PACKAGE=${{ matrix.CUDA_COMPAT_PACKAGE }} | |
| CUDA_CUDART_PACKAGE=${{ matrix.CUDA_CUDART_PACKAGE }} | |
| CUDA_VERSION=${{ matrix.CUDA_VERSION }} | |
| EXTRA_LIBRARIES=${{ matrix.EXTRA_LIBRARIES }} | |
| LIBCUDNN_PACKAGE=${{ matrix.LIBCUDNN_PACKAGE }} | |
| ADD_2204_APT_REPOS=${{ matrix.ADD_2204_APT_REPOS }} | |
| context: docker/cuda | |
| labels: ${{ steps.meta.outputs.labels }} | |
| load: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| cache-from: | | |
| type=inline | |
| type=registry,ref=${{ steps.vars.outputs.renku_base }} | |
| provenance: false | |
| - name: Image Acceptance Tests | |
| uses: cypress-io/github-action@v6 | |
| env: | |
| TEST_IMAGE_NAME: ${{ env.DOCKER_PREFIX }}-cuda:${{ steps.meta.outputs.version }} | |
| TEST_USER_NAME: jovyan | |
| TEST_SPEC: jupyterlab.cy.ts | |
| with: | |
| working-directory: tests | |
| command: npx mocha -r ts-node/register index.ts | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| RENKU_BASE=${{ steps.vars.outputs.renku_base }} | |
| CUDA_COMPAT_PACKAGE=${{ matrix.CUDA_COMPAT_PACKAGE }} | |
| CUDA_CUDART_PACKAGE=${{ matrix.CUDA_CUDART_PACKAGE }} | |
| CUDA_VERSION=${{ matrix.CUDA_VERSION }} | |
| EXTRA_LIBRARIES=${{ matrix.EXTRA_LIBRARIES }} | |
| LIBCUDNN_PACKAGE=${{ matrix.LIBCUDNN_PACKAGE }} | |
| context: docker/cuda | |
| labels: ${{ steps.meta.outputs.labels }} | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| provenance: false | |
| build-py-ext: | |
| needs: build-py | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| EXTENSION: | |
| - vnc | |
| - batch | |
| steps: | |
| - name: Docker Login | |
| uses: Azure/docker-login@v1 | |
| with: | |
| username: ${{ secrets.RENKU_DOCKER_USERNAME }} | |
| password: ${{ secrets.RENKU_DOCKER_PASSWORD }} | |
| - uses: actions/checkout@v4 | |
| - name: Set outputs | |
| id: vars | |
| run: | | |
| sha_short=$(git rev-parse --short HEAD) | |
| echo "sha_short=$sha_short" >> $GITHUB_OUTPUT | |
| echo "renku_base=${DOCKER_PREFIX}-py:${DEFAULT_PYTHON_VERSION}-${sha_short}" >> $GITHUB_OUTPUT | |
| - name: Set up QEMU | |
| uses: docker/[email protected] | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_PREFIX }}-${{ matrix.EXTENSION }} | |
| tags: | | |
| type=sha,prefix= | |
| type=semver,pattern={{version}},prefix= | |
| type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' }},prefix= | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| RENKU_BASE=${{ steps.vars.outputs.renku_base }} | |
| context: docker/${{ matrix.EXTENSION }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| cache-from: type=gha | |
| provenance: false | |
| build-vnc-ext: | |
| needs: build-py-ext | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| VNC-EXTENSION: | |
| - matlab | |
| - qgis | |
| steps: | |
| - name: Docker Login | |
| uses: Azure/docker-login@v1 | |
| with: | |
| username: ${{ secrets.RENKU_DOCKER_USERNAME }} | |
| password: ${{ secrets.RENKU_DOCKER_PASSWORD }} | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - uses: actions/checkout@v4 | |
| - name: Set outputs | |
| id: vars | |
| run: | | |
| sha_short=$(git rev-parse --short HEAD) | |
| echo "sha_short=$sha_short" >> $GITHUB_OUTPUT | |
| echo "renku_base=${DOCKER_PREFIX}-py:${DEFAULT_PYTHON_VERSION}-${sha_short}" >> $GITHUB_OUTPUT | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_PREFIX }}-${{ matrix.VNC-EXTENSION }} | |
| tags: | | |
| type=sha,prefix= | |
| type=semver,pattern={{version}},prefix= | |
| type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' }},prefix= | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| BASE_IMAGE=${{ env.DOCKER_PREFIX }}-vnc:${{ steps.vars.outputs.sha_short }} | |
| context: docker/${{ matrix.VNC-EXTENSION }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| cache-from: type=gha | |
| provenance: false | |
| build-julia-ext: | |
| needs: build-py | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - JULIA_VERSION: "1.7.1" | |
| JULIA_CHECKSUM: "44658e9c7b45e2b9b5b59239d190cca42de05c175ea86bc346c294a8fe8d9f11" | |
| - JULIA_VERSION: "1.8.5" | |
| JULIA_CHECKSUM: "e71a24816e8fe9d5f4807664cbbb42738f5aa9fe05397d35c81d4c5d649b9d05" | |
| - JULIA_VERSION: "1.9.0" | |
| JULIA_CHECKSUM: "00c614466ef9809c2eb23480e38d196a2c577fff2730c4f83d135b913d473359" | |
| steps: | |
| - name: Docker Login | |
| uses: Azure/docker-login@v1 | |
| with: | |
| username: ${{ secrets.RENKU_DOCKER_USERNAME }} | |
| password: ${{ secrets.RENKU_DOCKER_PASSWORD }} | |
| - uses: actions/checkout@v4 | |
| - name: Set up QEMU | |
| uses: docker/[email protected] | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Set outputs | |
| id: vars | |
| run: | | |
| sha_short=$(git rev-parse --short HEAD) | |
| echo "sha_short=$sha_short" >> $GITHUB_OUTPUT | |
| echo "renku_base=${DOCKER_PREFIX}-py:${DEFAULT_PYTHON_VERSION}-${sha_short}" >> $GITHUB_OUTPUT | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_PREFIX }}-julia | |
| tags: | | |
| type=sha,prefix=${{ matrix.JULIA_VERSION }}- | |
| type=semver,pattern={{version}},prefix=${{ matrix.JULIA_VERSION }}- | |
| type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' && matrix.JULIA_VERSION == '1.9.0' }} | |
| - name: Build and load | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| RENKU_BASE=${{ steps.vars.outputs.renku_base }} | |
| JULIA_VERSION_ARG=${{ matrix.JULIA_VERSION }} | |
| JULIA_CHECKSUM=${{ matrix.JULIA_CHECKSUM }} | |
| context: docker/julia | |
| labels: ${{ steps.meta.outputs.labels }} | |
| load: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| cache-from: type=gha | |
| cache-to: type=gha | |
| provenance: false | |
| - name: Image Acceptance Tests | |
| uses: cypress-io/github-action@v6 | |
| env: | |
| TEST_IMAGE_NAME: ${DOCKER_PREFIX}-julia:${{ matrix.JULIA_VERSION }}-${{ steps.vars.outputs.sha_short }} | |
| TEST_USER_NAME: jovyan | |
| TEST_SPEC: jupyterlab.cy.ts | |
| with: | |
| working-directory: tests | |
| command: npx mocha -r ts-node/register index.ts | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| RENKU_BASE=${{ steps.vars.outputs.renku_base }} | |
| context: docker/julia | |
| labels: ${{ steps.meta.outputs.labels }} | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| cache-from: type=gha | |
| provenance: false | |
| build-r-ubuntu: | |
| needs: build-py | |
| runs-on: ubuntu-latest | |
| env: | |
| RSTUDIO_VERSION: 2022.02.3-492 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - RVERSION: 4.1.0 | |
| BASE_IMAGE_NAME: rocker/verse | |
| EXTENSION: r | |
| - RVERSION: 4.1.1 | |
| BASE_IMAGE_NAME: rocker/verse | |
| EXTENSION: r | |
| - RVERSION: 4.1.2 | |
| BASE_IMAGE_NAME: rocker/verse | |
| EXTENSION: r | |
| - RVERSION: 4.2.0 | |
| BASE_IMAGE_NAME: rocker/verse | |
| EXTENSION: r | |
| - RVERSION: 4.2.3 | |
| BASE_IMAGE_NAME: rocker/verse | |
| EXTENSION: r | |
| - RVERSION: 4.3.1 | |
| BASE_IMAGE_NAME: rocker/verse | |
| EXTENSION: r | |
| - RVERSION: devel | |
| BASE_IMAGE_NAME: rocker/verse | |
| EXTENSION: r | |
| - RVERSION: RELEASE_3_14 | |
| BASE_IMAGE_NAME: bioconductor/bioconductor_docker | |
| EXTENSION: bioc | |
| - RVERSION: RELEASE_3_15 | |
| BASE_IMAGE_NAME: bioconductor/bioconductor_docker | |
| EXTENSION: bioc | |
| - RVERSION: RELEASE_3_16 | |
| BASE_IMAGE_NAME: bioconductor/bioconductor_docker | |
| EXTENSION: bioc | |
| - RVERSION: RELEASE_3_17 | |
| BASE_IMAGE_NAME: bioconductor/bioconductor_docker | |
| EXTENSION: bioc | |
| - RVERSION: devel | |
| BASE_IMAGE_NAME: bioconductor/bioconductor_docker | |
| EXTENSION: bioc | |
| steps: | |
| - name: Docker Login | |
| uses: Azure/docker-login@v1 | |
| with: | |
| username: ${{ secrets.RENKU_DOCKER_USERNAME }} | |
| password: ${{ secrets.RENKU_DOCKER_PASSWORD }} | |
| - uses: actions/checkout@v4 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Set outputs | |
| id: vars | |
| run: | | |
| sha_short=$(git rev-parse --short HEAD) | |
| echo "sha_short=$sha_short" >> $GITHUB_OUTPUT | |
| echo "renku_base=${DOCKER_PREFIX}-py:${DEFAULT_PYTHON_VERSION}-${sha_short}" >> $GITHUB_OUTPUT | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_PREFIX }}-${{ matrix.EXTENSION }} | |
| tags: | | |
| type=sha,prefix=${{ matrix.RVERSION }}- | |
| type=semver,pattern={{version}},prefix=${{ matrix.RVERSION }}- | |
| type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' && matrix.RVERSION == 'devel' }} | |
| - name: Clean cache | |
| run: | | |
| df -h | |
| rm -rf /opt/hostedtoolcache/* | |
| df -h | |
| - name: Build and load | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| RENKU_BASE=${{ steps.vars.outputs.renku_base }} | |
| BASE_IMAGE=${{ matrix.BASE_IMAGE_NAME }}:${{ matrix.RVERSION }} | |
| RSTUDIO_VERSION_OVERRIDE=${{ env.RSTUDIO_VERSION }} | |
| context: docker/r | |
| labels: ${{ steps.meta.outputs.labels }} | |
| load: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| cache-from: type=gha | |
| provenance: false | |
| - name: Image Acceptance Tests | |
| uses: cypress-io/github-action@v6 | |
| env: | |
| TEST_IMAGE_NAME: ${{ env.DOCKER_PREFIX }}-${{ matrix.EXTENSION }}:${{ matrix.RVERSION }}-${{ steps.vars.outputs.sha_short }} | |
| TEST_ENV: rstudio | |
| TEST_USER_NAME: rstudio | |
| TEST_SPEC: rstudio.cy.ts | |
| with: | |
| working-directory: tests | |
| start: docker images | |
| command: npx mocha -r ts-node/register index.ts | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| build-args: | | |
| RENKU_BASE=${{ steps.vars.outputs.renku_base }} | |
| BASE_IMAGE=${{ matrix.BASE_IMAGE_NAME }}:${{ matrix.RVERSION }} | |
| RSTUDIO_VERSION_OVERRIDE=${{ env.RSTUDIO_VERSION }} | |
| context: docker/r | |
| labels: ${{ steps.meta.outputs.labels }} | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| cache-from: type=gha | |
| provenance: false |