diff --git a/R/data.R b/R/data.R index 34ad72f..3d2b341 100644 --- a/R/data.R +++ b/R/data.R @@ -1,10 +1,8 @@ #' Mouse Embryo Data #' #' This dataset contains spatial transcriptomics data from 3 mouse embryos, with -#' 351 genes and a total of 57536 cells. For vignettes, we subset the data by selecting -#' only embryo 2 and removing all cells that were annotated as 'low quality'. After -#' subsetting, we have 14,185 cells from embryo 2 and 351 genes. -#' +#' 351 genes and a total of 57536 cells. For vignettes, we subset the data by randomly +#' selecting 5000 cells from embryo 2, excluding cells that were annotated as 'low quality'. #' #' @name mEmbryo2 #' @aliases me_data me_expr @@ -30,7 +28,6 @@ NULL #' any cells annotated as 'low quality'. After subsetting, we have 1000 cells from #' embryo 2 and 351 genes. #' -#' #' @name example #' @aliases spe nnCells regXclust #' @docType data @@ -55,11 +52,10 @@ NULL #' #' This dataset contains spatial transcriptomics data from 181 mouse hypothalamus #' samples embryos, 155 genes and a total of 1,027,080 cells. For running the -#' vignettes, we subset the data by selecting only 3 samples - Animal 1 Bregma -0.09 -#' and Animal 7 Bregmas 0.16 and -0.09, removed all cells that were annotated -#' as 'ambiguous', and removed 20 genes that were assessed using a different technology. -#' After subsetting, we have 15,848 cells from 3 mouse brain samples and 135 genes. -#' +#' vignettes, we subset the data by selecting total 6000 cells from only 3 samples +#' - Animal 1 Bregma -0.09 (2080 cells) and Animal 7 Bregmas 0.16 (1936 cells) and +#' -0.09 (1984 cells), excluding cells that were annotated as 'ambiguous', and +#' removed 20 genes that were assessed using a different technology. #' #' @name mHypothal #' @aliases mh_data mh_expr diff --git a/data/mEmbryo2.RData b/data/mEmbryo2.RData index a0919ed..f4a9e46 100644 Binary files a/data/mEmbryo2.RData and b/data/mEmbryo2.RData differ diff --git a/data/mHypothal.RData b/data/mHypothal.RData index 11ee807..e78c920 100644 Binary files a/data/mHypothal.RData and b/data/mHypothal.RData differ diff --git a/man/mEmbryo2.Rd b/man/mEmbryo2.Rd index 5749c06..f4930d1 100644 --- a/man/mEmbryo2.Rd +++ b/man/mEmbryo2.Rd @@ -22,8 +22,7 @@ data(mEmbryo2) } \description{ This dataset contains spatial transcriptomics data from 3 mouse embryos, with -351 genes and a total of 57536 cells. For vignettes, we subset the data by selecting -only embryo 2 and removing all cells that were annotated as 'low quality'. After -subsetting, we have 14,185 cells from embryo 2 and 351 genes. +351 genes and a total of 57536 cells. For vignettes, we subset the data by randomly +selecting 5000 cells from embryo 2, excluding cells that were annotated as 'low quality'. } \keyword{datasets} diff --git a/man/mHypothal.Rd b/man/mHypothal.Rd index 4ef18a1..36ae92d 100644 --- a/man/mHypothal.Rd +++ b/man/mHypothal.Rd @@ -23,9 +23,9 @@ data(mHypothal) \description{ This dataset contains spatial transcriptomics data from 181 mouse hypothalamus samples embryos, 155 genes and a total of 1,027,080 cells. For running the -vignettes, we subset the data by selecting only 3 samples - Animal 1 Bregma -0.09 -and Animal 7 Bregmas 0.16 and -0.09, removed all cells that were annotated -as 'ambiguous', and removed 20 genes that were assessed using a different technology. -After subsetting, we have 15,848 cells from 3 mouse brain samples and 135 genes. +vignettes, we subset the data by selecting total 6000 cells from only 3 samples +- Animal 1 Bregma -0.09 (2080 cells) and Animal 7 Bregmas 0.16 (1936 cells) and +-0.09 (1984 cells), excluding cells that were annotated as 'ambiguous', and +removed 20 genes that were assessed using a different technology. } \keyword{datasets}