Error in edgeCorrect

[megleila]

Hi -

I keep getting this error below and don't understand what specifically is incompatible or what I should try here. If I turn edgeCorrect = FALSE, it seems like the code runs, but I am worried that disabling edge correction may affect the statistical validity of the results. Do you have a suggestion for what to do or check? Thanks in advance!

spicyTest <- spicy(

• cells = cell_data_clean,
• condition = "condition",
• subject = "subject",
• imageIDCol = "imageID",
• cellTypeCol = "cellType",
• spatialCoordCols = c("x", "y"),
• window = "convex",
• verbose = TRUE,
• BPPARAM = BiocParallel::SerialParam()
• )
  Error: BiocParallel errors
  1 remote errors, element index: 1
  243 unevaluated and other errors
  first remote error:
  Error in dplyr::left_join(as.data.frame(p), edge, c("i", "d")): Can't join x$i with y$i due to incompatible types.

[shreyarajeshrao]

Hi @megleila,

Could you please check which version of spicyR you are using and upgrade to the latest version if needed? A few changes have been made to improve functionality/fix issues. If that doesn't work, could you share example data which produces this issue?