From f31b0f136b0f8ec34444aa05c79e8c2841735d0e Mon Sep 17 00:00:00 2001
From: Theodore Chang <tlcfem@gmail.com>
Date: Sat, 21 Sep 2024 17:21:32 +0200
Subject: [PATCH] Ignore files, ensure patch

---
 .github/workflows/docker.yml  |  2 +-
 .github/workflows/windows.yml |  2 ++
 MANIFEST.in                   | 53 +++++++++++++++++++++++++++++++++--
 eigen                         |  2 +-
 pybind11                      |  2 +-
 setup.py                      | 21 ++++++++++----
 6 files changed, 71 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
index fcc50b3..e32ca1d 100644
--- a/.github/workflows/docker.yml
+++ b/.github/workflows/docker.yml
@@ -4,7 +4,7 @@ on:
     branches: [ master ]
 jobs:
   ubuntu-dev:
-    if: "!contains(github.event.head_commit.message, '[skip]')"
+    if: ${{!contains(github.event.head_commit.message, '[skip]')}}
     runs-on: ubuntu-22.04
     timeout-minutes: 60
     steps:
diff --git a/.github/workflows/windows.yml b/.github/workflows/windows.yml
index 8b1e9a9..f5e91bb 100644
--- a/.github/workflows/windows.yml
+++ b/.github/workflows/windows.yml
@@ -4,6 +4,8 @@ on:
     branches: [ master ]
   pull_request:
     branches: [ master ]
+env:
+  VPMR_VERSION: ""
 jobs:
   windows:
     runs-on: windows-2022
diff --git a/MANIFEST.in b/MANIFEST.in
index ee64f21..40155f7 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -1,3 +1,50 @@
-graft .
-prune .git
-recursive-exclude .github .gitlab .circleci
+graft eigen
+graft exprtk
+graft exprtk-custom-types
+graft mpreal
+graft pybind11
+graft pyvpmr
+graft src
+include patch_size.patch
+prune eigen/.gitlab
+prune eigen/bench
+prune eigen/ci
+prune eigen/cmake
+prune eigen/debug
+prune eigen/demos
+prune eigen/doc
+prune eigen/failtest
+prune eigen/scripts
+prune eigen/test
+prune eigen/unsupported/bench
+prune eigen/unsupported/doc
+prune eigen/unsupported/test
+prune exprtk/.circleci
+prune mpreal/example
+prune pybind11/.github
+prune pybind11/docs
+prune pybind11/tests
+prune pybind11/tools
+prune test
+global-exclude .clang-format
+global-exclude .clang-tidy
+global-exclude .codespell-ignore-lines
+global-exclude .git
+global-exclude .git-blame-ignore-revs
+global-exclude .gitattributes
+global-exclude .gitignore
+global-exclude .hgeol
+global-exclude *.dat
+global-exclude *.in
+global-exclude *.inc
+global-exclude *.sh
+global-exclude *.txt
+global-exclude *.yaml
+global-exclude *.yml
+global-exclude *cmake*
+global-exclude changelog*
+global-exclude COPYING.*
+global-exclude INSTALL
+global-exclude LICENSE
+global-exclude Makefile
+prune eigen/Eigen/src/plugins
diff --git a/eigen b/eigen
index 132f281..2d4c9b4 160000
--- a/eigen
+++ b/eigen
@@ -1 +1 @@
-Subproject commit 132f281f501380faeba1b5b1fe7e4f237099c2a3
+Subproject commit 2d4c9b400cca33d2f5cf316efc7151236244edb1
diff --git a/pybind11 b/pybind11
index a7910be..1f8b4a7 160000
--- a/pybind11
+++ b/pybind11
@@ -1 +1 @@
-Subproject commit a7910be6307e442297e55c84901a96dd0d046e93
+Subproject commit 1f8b4a7f1a1c5cc9bd6e0d63fe15540e6c458b24
diff --git a/setup.py b/setup.py
index 0ffc001..b217fa2 100644
--- a/setup.py
+++ b/setup.py
@@ -8,17 +8,28 @@
 # noinspection PyTypeChecker
 setup(
     version=datetime.now().strftime("%y%m%d"),
-    long_description=(Path(__file__).parent / "README.md").read_text(encoding='utf8').replace(
-        "resource/", "https://raw.githubusercontent.com/TLCFEM/vpmr/master/resource/"),
-    long_description_content_type='text/markdown',
+    long_description=(Path(__file__).parent / "README.md")
+    .read_text(encoding="utf8")
+    .replace(
+        "resource/", "https://raw.githubusercontent.com/TLCFEM/vpmr/master/resource/"
+    ),
+    long_description_content_type="text/markdown",
     ext_modules=[
         Pybind11Extension(
             "_pyvpmr",
             ["src/VPMR.cpp"],
-            include_dirs=["eigen", "eigen/unsupported", "mpreal", "exprtk", "exprtk-custom-types"],
+            include_dirs=[
+                "eigen",
+                "eigen/unsupported",
+                "mpreal",
+                "exprtk",
+                "exprtk-custom-types",
+            ],
             libraries=["mpfr", "gmp", "tbb"],
             define_macros=[("PYVPMR", 1)],
-            extra_compile_args=['-fno-aligned-allocation'] if "Darwin" == platform.system() else [],
+            extra_compile_args=["-fno-aligned-allocation"]
+            if "Darwin" == platform.system()
+            else [],
         ),
     ],
     cmdclass={"build_ext": build_ext},