diff --git a/README.md b/README.md index 1c230f5..d6bd394 100755 --- a/README.md +++ b/README.md @@ -1,10 +1,10 @@ ![CoVigator logo](images/CoVigator_logo_txt_nobg.png "CoVigator logo") # CoVigator pipeline: variant detection pipeline for Sars-CoV-2 - +[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-≤23.04.0-23aa62.svg)](https://www.nextflow.io/) +[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) [![DOI](https://zenodo.org/badge/374669617.svg)](https://zenodo.org/badge/latestdoi/374669617) [![Run tests](https://github.com/TRON-Bioinformatics/covigator-ngs-pipeline/actions/workflows/automated_tests.yml/badge.svg?branch=master)](https://github.com/TRON-Bioinformatics/covigator-ngs-pipeline/actions/workflows/automated_tests.yml) -[![Powered by NumFOCUS](https://img.shields.io/badge/powered%20by-Nextflow-orange.svg?style=flat&colorA=E1523D&colorB=007D8A)](https://www.nextflow.io/) [![License](https://img.shields.io/badge/license-MIT-green)](https://opensource.org/licenses/MIT) diff --git a/nextflow.config b/nextflow.config index 6ed6ce9..1e59245 100755 --- a/nextflow.config +++ b/nextflow.config @@ -29,7 +29,10 @@ params.pfam_names_header = "$baseDir/reference/pfam_names.header.txt" params.pfam_descriptions_header = "$baseDir/reference/pfam_descriptions.header.txt" profiles { - conda { params.enable_conda = true } + conda { + params.enable_conda = true + conda.enabled = true + } debug { process.beforeScript = 'echo $HOSTNAME' } test { params.cpus = 1