diff --git a/.changeset/tidy-peas-dress.md b/.changeset/tidy-peas-dress.md
new file mode 100644
index 00000000000..fbccaee3fb8
--- /dev/null
+++ b/.changeset/tidy-peas-dress.md
@@ -0,0 +1,5 @@
+---
+'@talend/scripts-config-jest': patch
+---
+
+fix(TDP-12694): broken applyBabelTransformOn after pnpm use-case
diff --git a/tools/scripts-config-jest/__tests__/utils.test.js b/tools/scripts-config-jest/__tests__/utils.test.js
new file mode 100644
index 00000000000..5c1fcde8cf8
--- /dev/null
+++ b/tools/scripts-config-jest/__tests__/utils.test.js
@@ -0,0 +1,15 @@
+import { applyBabelTransformOn } from '../utils';
+
+describe('utilities', () => {
+	describe('applyBabelTransformOn', () => {
+		it('should add babel transform directive', () => {
+			const config = {
+				transformIgnorePatterns: ['node_modules/(?!(?:.pnpm/)?(d3|internmap))'],
+			};
+			applyBabelTransformOn(config, ['dexie']);
+			expect(config.transformIgnorePatterns[0]).toBe(
+				'node_modules/(?!(?:.pnpm/)?(d3|internmap|dexie))',
+			);
+		});
+	});
+});
diff --git a/tools/scripts-config-jest/utils.js b/tools/scripts-config-jest/utils.js
index 2f38fa81802..8e8ecd5a72e 100644
--- a/tools/scripts-config-jest/utils.js
+++ b/tools/scripts-config-jest/utils.js
@@ -1,7 +1,7 @@
 function applyBabelTransformOn(config, pkgs) {
 	config.transformIgnorePatterns[0] = config.transformIgnorePatterns[0].replace(
-		')',
-		`|${pkgs.join('|')})`,
+		/(\)\)$)/,
+		`|${pkgs.join('|')}$1`,
 	);
 }