Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

highlight specific genes on volcano plots #6

Open
yulianatan opened this issue Jan 28, 2021 · 0 comments
Open

highlight specific genes on volcano plots #6

yulianatan opened this issue Jan 28, 2021 · 0 comments

Comments

@yulianatan
Copy link

yulianatan commented Jan 28, 2021

I created 3 volcano plots for each tissue type (Eutopic, Ectopic, Ovarian), but needed some fix.
These are the gene list curated by Elise to highlight on the plot.

image

A few notes:
[ ] add certain font/bullet color for cell type specific genes (RBC-related genes: Red, Neuronal-related would be green, etc..)
[ ] add a vertical line for logFC cutoff threshold at logFC > 4
[ ] change the xticklable to (10, 5, 0, 5, 10) - since we are talking in "upregulated in sc [left] or bulk [right]"
[ ] if the one above are all possible, then bullet for genes with logFC < 4= grey, logFC > 4 = black, except highlighted genes

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant