ontology-check-trigger.yml

name: Check Ontology Release & Trigger Build-Deploy
on:
  workflow_call:
    inputs:
      ontology:
        description: 'The ontology to use.'
        required: true
        type: string
      international:
        description: 'Is the ontology babelon international?'
        default: false
        type: boolean
      load:
        description: 'Should load the data?'
        default: true
        type: boolean
jobs:
  watcher:
    runs-on: ubuntu-latest
    outputs:
     sha: ${{ steps.sha.outputs.value }}
     deploy: ${{ steps.compare.outputs.value }}
     international: ${{steps.international.outputs.value}}
    steps:
      - name: Authenticate to Google Cloud
        uses: 'google-github-actions/auth@v2'
        with:
          credentials_json: '${{ secrets.GCLOUD_SA_KEY }}'

      - name: Setup Google Cloud CLI
        uses: 'google-github-actions/setup-gcloud@v2'

      - name: Install jq
        run: sudo apt-get install jq

      - name: Get ontology config json
        run: |
          wget https://raw.githubusercontent.com/TheJacksonLaboratory/ontology-service/main/config/ontologies.json

      - name: Subset ontology config json
        run: jq -r '.[] | select(.prefix=="${{ inputs.ontology }}")' ontologies.json > target.json

      - name: Get international config
        uses: sergeysova/jq-action@v2
        id: international
        with:
          cmd: "jq -r '.international' target.json"

      - name: Get purl for ontology file
        uses: sergeysova/jq-action@v2
        id: purl
        with:
          cmd: "jq -r '.base_file' target.json"

      - name: Generate sha1 from purl file
        id: sha
        run: |
          SHA=$(curl -L ${{ steps.purl.outputs.value }} | shasum | cut -c -7)
          echo "value=$SHA" >> $GITHUB_OUTPUT

      - name: Get existing sha from service
        id: existing
        run:  |
          EXISTING=$(gcloud container images list-tags us-docker.pkg.dev/jax-cs-registry/docker/ontology/ontology-service-${{ inputs.ontology }} --limit 1 2>/dev/null | tail -n 1 | awk '{print $2}' | tr ',' '\n' | grep -v "latest" | grep -v "\." || echo "")
          echo "value=$EXISTING" >> $GITHUB_OUTPUT

      - name: Compare sha for load
        id: compare
        run: |
          echo "value=${{steps.sha.outputs.value != steps.existing.outputs.value }}" >> "$GITHUB_OUTPUT"

  trigger_deploy:
    needs: watcher
    if: needs.watcher.outputs.deploy == 'true'
    uses: TheJacksonLaboratory/ontology-service/.github/workflows/ontology-build-deploy.yml@main
    with:
        ontology: ${{ inputs.ontology }}
        international: ${{fromJSON(needs.watcher.outputs.international)}}
        load: ${{ inputs.load }}
        tag: ${{needs.watcher.outputs.sha}}
    secrets: inherit