v0.11.3

What's Changed

• Raise an exception in _default_ns_path_cred if no storage provider is set up by @jparismorgan in #494
• Use replacing visitor so we actually descend into batch args. by @thetorpedodog in #499

New Contributors

• @jparismorgan made their first contribution in #494

Full Changelog: v0.11.2...v0.11.3

v0.11.2

What's Changed

• Expose alternate graph return value on ingest by @johnkerl in #490
• First stage integration of generic Bioimg API for conversions by @ktsitsi in #451
• Support Delayed nodes in the VCF distributed query by @gspowley in #491
• Bump pyarrow from 12.0.1 to 14.0.1 by @dependabot in #483

New Contributors

• @dependabot made their first contribution in #483

Full Changelog: v0.11.1...v0.11.2

v0.11.1

What's Changed

• Move soma.py to a module directory by @johnkerl in #479
• Drain process_stream output buffers in separate threads by @gspowley in #480
• Support single file tiledb uris for exportation by @ktsitsi in #456
• Update default VCF ingestion batch size to 100 by @gspowley in #481
• Logger for bioimg by @ktsitsi in #474
• Disable VCF stats consolidation by @gspowley in #486
• Separating supported extensions from #482 by @ktsitsi in #484
• Add more tries to group register/deregister test. by @thetorpedodog in #488
• Add xarray as test dependency, partial for sc-37280 by @ihnorton in #487
• VCF batch mode ingestion updates by @gspowley in #489

Full Changelog: v0.11.0...v0.11.1

v0.11.0

This release changes the way parameters are passed to UDFs and the default format for returned data. While this enables passing Pandas objects with compatibility across Pandas versions, it also means that tuples will be serialized on the wire as lists (unless they are inside of a non–JSON serializable object).

What's Changed

• Pass parameters as tiledb_json. by @thetorpedodog in #475
• Request UDF results as tiledb_json format by default. by @thetorpedodog in #476

Full Changelog: v0.10.24...v0.11.0

v0.10.24

What's Changed

• Relative group members in VCF ingestion by @gspowley in #470
• Dynamic distributed fragment consolidation by @gspowley in #462
• Fix check for resources on client-side task graphs. by @thetorpedodog in #472
• Add link to API docs in README by @ihnorton in #471
• Enable using the Pandas-as-Arrow codec for DataFrames. by @thetorpedodog in #468
• Add pin to cloudpickle <3. by @thetorpedodog in #478

Full Changelog: v0.10.23...v0.10.24

v0.10.23

What's Changed

• Add raw_json TDBUDF sentinel. by @thetorpedodog in #466
• Add and test codec for encoding Pandas via Arrow. by @thetorpedodog in #465

Full Changelog: v0.10.22...v0.10.23

v0.10.22

What's Changed

• Only descend into built-in types when searching for Nodes. by @thetorpedodog in #464
• Reorganize UDF data codecs to prepare for better serialization. by @thetorpedodog in #463

Full Changelog: v0.10.21...v0.10.22

v0.10.21

What's Changed

• Avoid importing Pandas as long as possible. by @thetorpedodog in #459
• Ensure that server-side task failures are not double-reported. by @thetorpedodog in #460
• Update tests to use TileDB Python 0.23.0. by @thetorpedodog in #461

Full Changelog: v0.10.20...v0.10.21

v0.10.20

What's Changed

• Add VCF create and register functions by @gspowley in #457
• Add compression_level arg to VCF ingestion by @gspowley in #458

Full Changelog: v0.10.19...v0.10.20

v0.10.19

What's Changed

• Add basic groups.info function for group metadata. by @thetorpedodog in #455

Full Changelog: v0.10.18...v0.10.19