Fix TypeError: 'FragmentsInfoIterator' object is not iterable #7356
Workflow file for this run
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| name: TileDB Python CI | |
| on: [push, pull_request, workflow_dispatch] | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| env: | |
| S3_BUCKET: ${{ vars.S3_BUCKET }} | |
| TILEDB_NAMESPACE: ${{ vars.TILEDB_NAMESPACE }} | |
| TILEDB_TOKEN: ${{ secrets.TILEDB_TOKEN }} | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| matrix: | |
| os: | |
| - ubuntu-latest | |
| - macos-13 | |
| # libfaketime tests fail on macos arm. Disable tests for now. | |
| # - macos-14 | |
| - windows-latest | |
| python-version: [ "3.9", "3.10", "3.11", "3.12", "3.13" ] | |
| fail-fast: false | |
| env: | |
| MACOSX_DEPLOYMENT_TARGET: "11" | |
| steps: | |
| - name: Checkout TileDB-Py `dev` | |
| uses: actions/checkout@v4 | |
| - name: Setup MSVC toolset (VS 2022) | |
| uses: TheMrMilchmann/setup-msvc-dev@v3 | |
| if: startsWith(matrix.os, 'windows') | |
| with: | |
| arch: x64 | |
| - name: Install Ninja (VS 2022) | |
| uses: seanmiddleditch/gha-setup-ninja@v4 | |
| if: startsWith(matrix.os, 'windows') | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Print Python version | |
| run: | | |
| which python | |
| which pip | |
| python --version | |
| - name: Print env | |
| run: printenv | |
| - name: Print pip debug info | |
| run: pip debug --verbose | |
| # Remove after upstream PR fully-deployed: | |
| # - https://github.com/actions/runner-images/pull/7125 | |
| - name: "Install homebrew dependencies" | |
| run: brew install pkg-config | |
| if: startsWith(matrix.os, 'macos') | |
| - name: "Install libfaketime (linux and macOS)" | |
| if: ${{ ! startsWith(matrix.os, 'windows') }} | |
| run: | | |
| git clone https://github.com/wolfcw/libfaketime/ | |
| cd libfaketime | |
| sudo make install | |
| cd .. | |
| - name: "Build and Install TileDB-Py" | |
| # We use pipx here to produce wheel/sdist to upload as artifact in case of error | |
| run: | | |
| pipx run --python ${{ matrix.python-version }} build | |
| WHEEL_NAME=$(ls dist/*.whl) | |
| pip install --verbose ${WHEEL_NAME}[test] | |
| - name: "Run tests" | |
| run: | | |
| PROJECT_CWD=$PWD | |
| rm tiledb/__init__.py | |
| cd /tmp | |
| pytest -vv --showlocals $PROJECT_CWD | |
| - name: "Re-run tests without pandas" | |
| run: | | |
| pip uninstall -y pandas | |
| pytest -vv --showlocals $PROJECT_CWD | |
| - name: "Print log files (failed build only)" | |
| run: | | |
| set -xeo pipefail | |
| # Display log files if the build failed | |
| echo 'Dumping log files for failed build' | |
| echo '----------------------------------' | |
| for f in $(find build -name *.log); | |
| do echo '------' | |
| echo $f | |
| echo '======' | |
| cat $f | |
| done; | |
| if: failure() | |
| - name: "Upload files for debug" | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: cibw-wheels-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: "." |