99-si.Rmd

# Session information

The following packages have been used to generate this document.

```{r include=FALSE}
# automatically create a bib database for R packages
knitr::write_bib(c(
  .packages(), 'bookdown', 'knitr', 'rmarkdown', 'msmbstyle'
), 'packages.bib')
```

```{r si}
sessionInfo()
```

## R package setup {#sec-setup2}

To install all necessary packages to run all the code, please execute
the following code:

```{r pkgs, eval=TRUE, echo=FALSE, results='markup', comment=''}
pkgs <- .packages()
pkgs <- paste0('"', pkgs, '"')
cmd <- paste(sort(pkgs), collapse = ", ")
cmd <- paste0("pkgs <- c(", cmd, ")")
cmd <- strwrap(cmd)
for (i in 2:length(cmd))
    cmd[i] <- paste0("          ", cmd[i])
cat(cmd, sep = "\n")
```

```{r setup, eval=FALSE}
if (!require("BiocManager"))
   install.packages("BiocManager")
BiocManager::install(pkgs)
```