diff --git a/DESCRIPTION b/DESCRIPTION index 473eed6..bf906ef 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -6,8 +6,10 @@ Authors@R: c(person(given = "Laurent", family = "Gatto", email = "laurent.gatto@uclouvain.be", comment = c(ORCID = "0000-0002-1520-2268"), role = c("cre", "aut")), - person(given = "Theo", family = "Killian", - role = "aut")) + person(given = "Theo", family = "Killian", + role = "aut"), + person(given = "Alexander", family = "Peltzer", role = "aut", + comment = c(ORCID = "0000-0002-6503-2180"))) Description: The depmap package is a data package that accesses datsets from the Broad Institute DepMap cancer dependency study using ExperimentHub. Datasets from the most current release are available, including RNAI and CRISPR-Cas9 diff --git a/NEWS.md b/NEWS.md index 437650b..84fc592 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,9 @@ # depmap 1.19 +## Changes in version 1.19.1 + +- Added 24Q2 data to `dmsets` and `dmfiles` to enable latest data to be analyzed + ## Changes in version 1.19.0 - New devel version. diff --git a/inst/extdata/dmfiles.rds b/inst/extdata/dmfiles.rds index df95e90..1da52cf 100644 Binary files a/inst/extdata/dmfiles.rds and b/inst/extdata/dmfiles.rds differ diff --git a/inst/extdata/dmsets.rds b/inst/extdata/dmsets.rds index c687128..e6c5397 100644 Binary files a/inst/extdata/dmsets.rds and b/inst/extdata/dmsets.rds differ diff --git a/inst/scripts/make-dmfiles.R b/inst/scripts/make-dmfiles.R index 95c51cf..0937b41 100644 --- a/inst/scripts/make-dmfiles.R +++ b/inst/scripts/make-dmfiles.R @@ -1,8 +1,9 @@ ## List of URLs obtained from the DepMap Figshare page ## (https://figshare.com/authors/Broad_DepMap/5514062) on the -## 25 February 2024. +## 15 August 2024 depmapURLs <- - c("https://figshare.com/articles/dataset/DepMap_23Q4_Public/24667905", + c("https://figshare.com/articles/dataset/DepMap_24Q2_Public/25880521", + "https://figshare.com/articles/dataset/DepMap_23Q4_Public/24667905", "https://figshare.com/articles/dataset/DepMap_23Q2_Public/22765112", "https://figshare.com/articles/dataset/DepMap_22Q4_Public/21637199", "https://figshare.com/articles/dataset/DepMap_22Q2_Public/19700056", @@ -39,7 +40,6 @@ dmsets <- tibble(url = depmapURLs) |> dmfiles <- DepMapFiles(dmsets$data) ## or dmfiles <- DepMapFiles(DepMapDataset(depmap$dataset_id)) - -extdata <- "~/wrk/depmap/inst/extdata" +extdata <- "~/repos/OS/depmap/inst/extdata" saveRDS(dmsets, file = file.path(extdata, "dmsets.rds")) saveRDS(dmfiles, file = file.path(extdata, "dmfiles.rds"))