From ae9500c4440de57a60515c5f86d2af564958c64b Mon Sep 17 00:00:00 2001
From: Keven Quach <belfami@gmail.com>
Date: Wed, 25 Sep 2024 16:58:43 +0200
Subject: [PATCH] Fix variable reference (#16)

* Fix variable reference

* Remove website-related content

* Add commit and push after sorting

Co-authored-by: Jelle Treep <40466121+jelletreep@users.noreply.github.com>

* fix typo

---------

Co-authored-by: Jelle Treep <40466121+jelletreep@users.noreply.github.com>
---
 .../{create-mkdocs.yml => sort_readme.yml}    | 28 +++++++++----------
 README.md                                     |  2 +-
 docs/stylesheets/extra.css                    |  4 ---
 mkdocs.yml                                    | 13 ---------
 4 files changed, 14 insertions(+), 33 deletions(-)
 rename .github/workflows/{create-mkdocs.yml => sort_readme.yml} (50%)
 delete mode 100644 docs/stylesheets/extra.css
 delete mode 100644 mkdocs.yml

diff --git a/.github/workflows/create-mkdocs.yml b/.github/workflows/sort_readme.yml
similarity index 50%
rename from .github/workflows/create-mkdocs.yml
rename to .github/workflows/sort_readme.yml
index 2494fc4..7c81fac 100644
--- a/.github/workflows/create-mkdocs.yml
+++ b/.github/workflows/sort_readme.yml
@@ -17,19 +17,17 @@ jobs:
       - name: sort readme # run the run.py to get the latest data
         run: |
           python sort.py
-      - name: Deploy main
-        uses: JamesIves/github-pages-deploy-action@4.1.5
+          
+       - name: Commit files
+         run: |
+           git config --local user.email "github@uu.nl"
+           git config --local user.name "GitHub Utrecht University"
+           git add .
+           git commit -m "sort README"
+        continue-on-error: true
+      - name: Push changes
+        uses: ad-m/github-push-action@master
         with:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          BRANCH: main
-          FOLDER: .
-      - name: Build
-        run: |
-          sed 's/docs\/img\//img\//g' README.md > docs/index.md
-          mkdocs build
-      - name: Deploy pages
-        uses: JamesIves/github-pages-deploy-action@4.1.5
-        with:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          BRANCH: gh-pages
-          FOLDER: site
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+        continue-on-error: true
+          
diff --git a/README.md b/README.md
index 5c139a4..861b51f 100644
--- a/README.md
+++ b/README.md
@@ -71,7 +71,7 @@ A curated list of awesome research code, software, manuals, and more on Git, dev
 - [Ricgraph](https://github.com/UtrechtUniversity/ricgraph) - With Ricgraph, you can create a graph from research information that is stored in various source systems. You can explore this graph and discover relations you were not aware of. For code, extensive documentation and videos follow the link.
 - [ShellChron](https://github.com/nielsjdewinter/ShellChron) - R package for constructing age models based on stable oxygen isotope records from accretionary carbonate archives
 - [Stitch](https://github.com/snijderlab/stitch) - A program for de novo sequencing of antibodies/proteins based on massspectrometry data.
-- [StratPal](https://github.com/MindTheGap-ERC/StratPal/) - R package to build modeling pipelines for paleontology
+- [StratPal](https://github.com/MindTheGap-ERC/StratPal) - R package to build modeling pipelines for paleontology
 - [text_explainability](https://git.science.uu.nl/m.j.robeer/text_explainability) - A generic explainability architecture for explaining text machine learning models.
 - [text_sensitivity](https://git.science.uu.nl/m.j.robeer/text_sensitivity) - Extension of text_explainability for sensitivity testing (robustness, fairness).
 
diff --git a/docs/stylesheets/extra.css b/docs/stylesheets/extra.css
deleted file mode 100644
index 60f8a2e..0000000
--- a/docs/stylesheets/extra.css
+++ /dev/null
@@ -1,4 +0,0 @@
-:root>* {
-  --md-typeset-a-color: #0000EE;
-  --md-accent-fg-color: #FFCD00;
-  }
\ No newline at end of file
diff --git a/mkdocs.yml b/mkdocs.yml
deleted file mode 100644
index e066a36..0000000
--- a/mkdocs.yml
+++ /dev/null
@@ -1,13 +0,0 @@
-site_name: Awesome Utrecht University
-site_description: A curated list of awesome projects from Utrecht University. The purpose of this repository is to have a selection of projects that scored high on openness criteria and stars in order to showcase good examples of open practices.
-site_author: Keven Quach
-repo_name: UtrechtUniversity/awesome-utrecht-university
-repo_url: https://github.com/UtrechtUniversity/awesome-utrecht-university
-edit_uri: ""
-theme:
-  name: material
-  palette:
-    primary: grey
-    accent: amber
-extra_css:
-  - stylesheets/extra.css
\ No newline at end of file