*Make T1w folder copy of pseudo transmit field

Washington-University · Mar 13, 2019 · ae53eb6 · ae53eb6
1 parent 25e65fc
commit ae53eb6
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/fMRIVolume/scripts/DistortionCorrectionAndEPIToT1wReg_FLIRTBBRAndFreeSurferBBRbased.sh b/fMRIVolume/scripts/DistortionCorrectionAndEPIToT1wReg_FLIRTBBRAndFreeSurferBBRbased.sh
@@ -587,11 +587,12 @@ then
             #${FSLDIR}/bin/imcp ${WD}/${File}_unbias ${SubjectFolder}/T1w/Results/${NameOffMRI}/${NameOffMRI}_${File}
         done
 
-        #copy bias field and dropouts, etc to results dir
+        #copy recieve field, pseudo transmit field, and dropouts, etc to results dir
         ${FSLDIR}/bin/imcp "$WD/ComputeSpinEchoBiasField/${NameOffMRI}_dropouts" "$SubjectFolder/T1w/Results/$NameOffMRI/${NameOffMRI}_dropouts"
         ${FSLDIR}/bin/imcp "$WD/ComputeSpinEchoBiasField/${NameOffMRI}_sebased_bias" "$SubjectFolder/T1w/Results/$NameOffMRI/${NameOffMRI}_sebased_bias"
         ${FSLDIR}/bin/imcp "$WD/ComputeSpinEchoBiasField/${NameOffMRI}_sebased_reference" "$SubjectFolder/T1w/Results/$NameOffMRI/${NameOffMRI}_sebased_reference"
-
+        ${FSLDIR}/bin/imcp "$WD/ComputeSpinEchoBiasField/${NameOffMRI}_pseudo_transmit_raw" "$SubjectFolder/T1w/Results/$NameOffMRI/${NameOffMRI}_pseudo_transmit_raw"
+        ${FSLDIR}/bin/imcp "$WD/ComputeSpinEchoBiasField/${NameOffMRI}_pseudo_transmit_field" "$SubjectFolder/T1w/Results/$NameOffMRI/${NameOffMRI}_pseudo_transmit_field"
     else
         #don't need to do anything more with scout, it is 1-step resampled and bias correction, jacobians reapplied
         Files="PhaseOne_gdc_dc PhaseTwo_gdc_dc"