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environment.yml
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environment.yml
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name: test
channels:
- dranew
- anaconda
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.1=anacondar_1
- adapterremoval=2.3.1=hb7ba0dd_1
- bcftools=1.9=ha228f0b_4
- bedtools=2.30.0=hc088bd4_0
- binutils_impl_linux-64=2.33.1=he1b5a44_7
- binutils_linux-64=2.33.1=h9595d00_17
- bioconductor-dnacopy=1.60.0=r36h6e990d7_0
- biopython=1.76=py36h516909a_0
- bismark=0.23.0=0
- blas=1.0=openblas
- bowtie2=2.4.2=py36h5202f60_1
- bwidget=1.9.14=ha770c72_0
- bx-python=0.8.10=py36h5e0341f_0
- bzip2=1.0.8=h516909a_3
- ca-certificates=2021.1.19=h06a4308_1
- cairo=1.14.12=h8948797_3
- centrifuge=1.0.4_beta=py36pl526he941832_2
- certifi=2020.12.5=py36h5fab9bb_1
- cnvkit=0.9.6=py36_1
- curl=7.71.1=he644dc0_3
- cycler=0.10.0=py36_0
- dbus=1.13.18=hb2f20db_0
- decorator=4.4.2=py_0
- expat=2.2.10=he6710b0_2
- fastqc=0.11.9=0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.13.0=h9420a91_0
- freetype=2.10.4=h5ab3b9f_0
- fribidi=1.0.10=h36c2ea0_0
- future=0.18.2=py36h5fab9bb_3
- gatk4=4.2.0.0=0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_17
- gfortran_impl_linux-64=7.3.0=hdf63c60_5
- gfortran_linux-64=7.3.0=h553295d_17
- glib=2.67.4=h36276a3_1
- graphite2=1.3.13=h58526e2_1001
- gsl=2.4=h294904e_1006
- gst-plugins-base=1.14.0=h8213a91_2
- gstreamer=1.14.0=h28cd5cc_2
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_17
- harfbuzz=2.4.0=hca77d97_0
- hisat2=2.2.1=he1b5a44_2
- hmmcopy_utils=0.0.1=1
- icu=58.2=he6710b0_3
- joblib=0.17.0=py_0
- jpeg=9b=habf39ab_1
- kiwisolver=1.2.0=py36hfd86e86_0
- krb5=1.17.2=h926e7f8_0
- lcms2=2.11=h396b838_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libblas=3.8.0=17_openblas
- libcblas=3.8.0=17_openblas
- libcurl=7.71.1=hcdd3856_3
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20191231=h14c3975_1
- libffi=3.3=he6710b0_2
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libopenblas=0.3.10=h5a2b251_0
- libpng=1.6.37=hbc83047_0
- libssh2=1.9.0=hab1572f_5
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.1.0=h2733197_1
- libuuid=1.0.3=h1bed415_2
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.10=hb55368b_3
- lz4-c=1.9.2=heb0550a_3
- lzo=2.10=h516909a_1000
- make=4.3=hd18ef5c_1
- matplotlib=3.3.1=0
- matplotlib-base=3.3.1=py36h817c723_0
- ncurses=6.2=he6710b0_1
- networkx=2.5=py_0
- nomkl=3.0=0
- numpy=1.19.1=py36h30dfecb_0
- numpy-base=1.19.1=py36h75fe3a5_0
- olefile=0.46=py36_0
- openjdk=8.0.265=h516909a_0
- openssl=1.1.1j=h27cfd23_0
- pandas=1.1.3=py36he6710b0_0
- pango=1.45.3=hd140c19_0
- patsy=0.5.1=py36_0
- pcre=8.44=he6710b0_0
- perl=5.26.2=h36c2ea0_1008
- pillow=8.0.0=py36h9a89aac_0
- pip=21.0.1=py36h06a4308_0
- pixman=0.40.0=h36c2ea0_0
- pomegranate=0.13.3=py36hdb11119_0
- pybedtools=0.8.1=py36h5202f60_2
- pyfaidx=0.5.9.5=pyh3252c3a_0
- pyparsing=2.4.7=py_0
- pyqt=5.9.2=py36h22d08a2_1
- pysam=0.15.3=py36hda2845c_1
- python=3.6.10=h7579374_2
- python-box=5.3.0=pyhd8ed1ab_0
- python-dateutil=2.8.1=py_0
- python-lzo=1.12=py36h864e7bf_1001
- python_abi=3.6=1_cp36m
- pytz=2020.1=py_0
- pyyaml=5.3.1=py36he6145b8_1
- qt=5.9.7=h5867ecd_1
- qualimap=2.2.2a=1
- r-base=3.6.1=haffb61f_2
- r-cghflasso=0.2_1=r36h6e990d7_1004
- readline=8.1=h27cfd23_0
- reportlab=3.5.55=py36h2b69fcf_0
- ruamel.yaml=0.16.12=py36h7b6447c_1
- ruamel.yaml.clib=0.2.2=py36h7b6447c_0
- samtools=1.6=h9dace67_6
- scikit-learn=0.23.2=py36h0573a6f_0
- scipy=1.5.2=py36habc2bb6_0
- seaborn=0.11.0=py_0
- setuptools=52.0.0=py36h06a4308_0
- sip=4.19.24=py36he6710b0_0
- six=1.15.0=py_0
- sqlite=3.33.0=h62c20be_0
- statsmodels=0.12.0=py36h7b6447c_0
- tbb=2020.2=hc9558a2_0
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=hbc83047_0
- tktable=2.10=hb7b940f_3
- toml=0.10.1=py_0
- tornado=6.0.4=py36h7b6447c_1
- tqdm=4.50.2=py_0
- wheel=0.36.2=pyhd3eb1b0_0
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h516909a_0
- yattag=1.13.2=py_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.4=h0b5b093_3
- pip:
- cfdnapipe