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compatibility with hiChIP data #28

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SplitInf opened this issue Nov 28, 2021 · 3 comments
Open

compatibility with hiChIP data #28

SplitInf opened this issue Nov 28, 2021 · 3 comments
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enhancement New feature or request

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@SplitInf
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Hi this is more of a question than an issue. I was wondering if NeoLoopFinder can be applied to H3K27ac HiChIP, given the enhancer hijack use case as illustrated in the nature paper? Thanks!

@XiaoTaoWang
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Hi, current NeoLoopFinder version cannot be directly applied to pulldown-based experiments. However, this extension is exactly what I want to add in next version :)

@SplitInf
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SplitInf commented Dec 5, 2021

Fantastic, that will be very useful for the community! Looking forward to use it.

@XiaoTaoWang XiaoTaoWang added the enhancement New feature or request label Jan 11, 2022
@brottodb
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brottodb commented Oct 9, 2024

Hi! I was wondering if using the tool with H3K27ac HiChIP is now possible. That would be incredibly helpful! Thank you!

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