forked from SPECFEM/specfem3d
-
Notifications
You must be signed in to change notification settings - Fork 0
/
manual_SPECFEM3D_Cartesian.tex
264 lines (195 loc) · 6.41 KB
/
manual_SPECFEM3D_Cartesian.tex
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
% !TEX encoding = IsoLatin
%% LyX 2.0.2 created this file. For more info, see http://www.lyx.org/.
%% Do not edit unless you really know what you are doing.
\documentclass[oneside,english]{book}
\usepackage[T1]{fontenc}
%% DK DK we do not accept accented letters, use the old LaTeX syntax
%% DK DK for them instead: \'e \`e \"e \^e and so on.
%% DK DK \usepackage[latin1]{inputenc}
\usepackage[letterpaper]{geometry}
\geometry{verbose,tmargin=1in,bmargin=1in,lmargin=1in,rmargin=1in}
% table of contents and numbering
\usepackage{tocbibind}
\setcounter{secnumdepth}{3}
\setcounter{tocdepth}{3}
\usepackage{enumitem}
\usepackage{babel}
\usepackage{float}
\usepackage{textcomp}
\usepackage{amsmath}
\usepackage{amssymb}
\IfFileExists{url.sty}{\usepackage{url}}
{\newcommand{\url}{\texttt}}
% biblio
\usepackage[authoryear]{natbib}
% biblio GJI
\bibliographystyle{abbrvnat}
% fonts
\usepackage{times}
% figures
\usepackage{graphicx}
% we are running pdflatex, so convert .eps files to .pdf
%\usepackage[dvips]{epsfig}
% colors to show the corrections
\usepackage[dvipsnames,usenames]{xcolor}
\definecolor{light-gray}{rgb}{0.7,0.7,0.7}
\definecolor{dark-gray}{rgb}{0.1,0.1,0.3}
\definecolor{light-blue}{rgb}{0.7,0.7,0.9}
\definecolor{dark-blue}{rgb}{0.2,0.2,0.5}
% hyperlinks to sections and references
\usepackage[pdftex]{hyperref}
% more options
\hypersetup{
bookmarks=true,
bookmarksnumbered=true,
pdfpagemode=UseNone,
pdfstartview=FitH,
pdfpagelayout=SinglePage,
pdfborder={0 0 0},
colorlinks=true, % color links
citecolor=dark-gray, % citation links
filecolor=dark-gray, % file links
linkcolor=dark-gray, % internal link (rgb values)
urlcolor=dark-blue % external weblinks
}
% create thumbnails
%\usepackage[pdftex]{thumbpdf}
\usepackage{breakurl}
% BibTeX logo
\newcommand{\BibTeX}{{\rm B\kern-.05em{\sc i\kern-.025em b}\kern-.08em{T}\kern-.1667em\lower.7ex\hbox{E}\kern-.125emX}}
\makeatletter
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% LyX specific LaTeX commands.
\newcommand{\noun}[1]{\textsc{#1}}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Textclass specific LaTeX commands.
\newenvironment{lyxcode}
{\par\begin{list}{}{
\setlength{\rightmargin}{\leftmargin}
\setlength{\listparindent}{0pt}% needed for AMS classes
\raggedright
\setlength{\itemsep}{0pt}
\setlength{\parsep}{0pt}
\normalfont\ttfamily}%
\item[]}
{\end{list}}
\newenvironment{lyxlist}[1]
{\begin{list}{}
{\settowidth{\labelwidth}{#1}
\setlength{\leftmargin}{\labelwidth}
\addtolength{\leftmargin}{\labelsep}
\renewcommand{\makelabel}[1]{##1\hfil}}}
{\end{list}}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% User specified LaTeX commands.
%\renewcommand{\baselinestretch}{1.5}
% hyperlinks to sections and references
%\newcommand{\urlwithparentheses}[1]{(\url{#1})}
\newcommand{\nexxi}{\mbox{\texttt{NEX\_XI\/}}}
\newcommand{\nexeta}{\mbox{\texttt{NEX\_ETA\/}}}
\newcommand{\nprocxi}{\mbox{\texttt{NPROC\_XI\/}}}
\newcommand{\nproceta}{\mbox{\texttt{NPROC\_ETA\/}}}
\newcommand{\nchunks}{\mbox{\texttt{NCHUNKS\/}}}
\newcommand{\eg}{e.g.,}
% colors for the text
\newcommand{\red}[1]{\textbf{\textcolor{Red}{#1}}}
% some of Dimitri's aliases for math symbols
\newcommand{\Grad}{\mbox{\boldmath $\bf \nabla$}}
\newcommand{\Div}{\Grad \cdot }
\newcommand{\Laplacian}{\nabla^2}
\newcommand{\pressure}{p}
\newcommand{\Int}{\displaystyle\int}
\newcommand{\Sum}{\displaystyle\sum}
\renewcommand{\epsilon}{\varepsilon}
\newcommand{\myiomega}{\mathbf{i} \, \omega}
\newcommand{\p}{\partial}
\newcommand{\boldu}{\mathbf{u}}
\newcommand{\boldv}{\mathbf{v}}
\newcommand{\boldw}{\mathbf{w}}
\newcommand{\boldx}{\mathbf{x}}
\newcommand{\boldy}{\mathbf{y}}
\newcommand{\boldm}{\mathbf{m}}
\newcommand{\boldp}{\mathbf{p}}
\newcommand{\boldg}{\mathbf{g}}
\newcommand{\bolds}{\mathbf{s}}
\newcommand{\boldn}{\mathbf{\hat{n}}}
\newcommand{\boldd}{\mathbf{d}}
\newcommand{\boldf}{\mathbf{f}}
\newcommand{\boldB}{\mathbf{B}}
\newcommand{\boldc}{\mathbf{c}}
\newcommand{\boldC}{\mathbf{C}}
\newcommand{\boldE}{\mathbf{E}}
\newcommand{\boldH}{\mathbf{H}}
\newcommand{\boldI}{\mathbf{I}}
\newcommand{\boldsigma}{\mbox{\boldmath $\bf \sigma$}}
\newcommand{\boldxi}{\mbox{\boldmath $\bf \xi$}}
\newcommand{\boldvarepsilon}{\mbox{\boldmath $\bf \varepsilon$}}
\newcommand{\bolddelta}{\mbox{\boldmath $\bf \delta$}}
\newcommand{\boldtau}{\mbox{\boldmath $\bf \tau$}}
\newcommand{\Boxmath}{\Lambda}
\newcommand{\rmd}{\, \mathrm{d}}
\newcommand{\pv}{\ ,}
\newcommand{\pp}{\ .}
\makeatother
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Start of document.
\begin{document}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% TITLE page
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{center}
\thispagestyle{empty}\vspace*{-1.8truecm} %
\makebox[1\textwidth]{%
\includegraphics[width=0.83\paperwidth]{figures/specfem_3d_Cartesian-cover.pdf} %
}
\par\end{center}
\title{\textbf{SPECFEM3D}\\
\textbf{Cartesian}\\
\textbf{User Manual}}
\author{\copyright \, CNRS (France), Princeton University (USA),\\
and ETH Z\"urich (Switzerland)\\
Version 4.1}
% date of last edit
\date{\today}
\maketitle
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{authors}
\newpage{}
\include{sponsors}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Table of contents
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newpage{}
\tableofcontents{}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{01_introduction}
\include{02_getting_started}
\include{03_mesh_generation}
\include{04_creating_databases}
\include{05_running_the_solver}
\include{06_fault_sources}
\include{07_adjoint_simulations}
\include{08_doing_tomography}
\include{08b_performing_full_waveform_inversion_FWI_or_source_inversions}
\include{09_noise_simulations}
\include{10_gravity_calculations}
\include{11_graphics}
\include{12_running_scheduler}
\include{13_changing_the_model}
\include{14_post_processing}
\include{15_informations_for_developers}
\include{features}
\include{bug_reports}
\include{notes_and_acknowledgement}
\include{copyright_and_version}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% REFERENCES
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\bibliography{bibliography}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% APPENDIX
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\appendix
%dummy comment inserted by tex2lyx to ensure that this paragraph is not empty
\include{A_reference_frame}
\include{B_channel_codes}
\include{C_troubleshooting}
\include{D_license}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\end{document}