From 71371cd4da003c5616f52c60d1f3c0cbf024b311 Mon Sep 17 00:00:00 2001 From: Riccardo Calandrelli Date: Wed, 4 Mar 2020 15:56:14 -0800 Subject: [PATCH] Fixed typo --- .DS_Store | Bin 10244 -> 10244 bytes tutorial/normalization-yaffe-tanay.md | 3 +-- 2 files changed, 1 insertion(+), 2 deletions(-) diff --git a/.DS_Store b/.DS_Store index 93022ae00d9c73888d9925b8d0403cd0f0add2a0..7cee1cd7bc285ef81c5271b8a77705cf967442f2 100644 GIT binary patch delta 132 zcmZn(XbIS`L2UA8S&_-M0=be>)z!L&28KpD3PzTuwK@vb78YhY3Z^FJlY8Y%H`j`H ZvEf&?xmT`&aWlKZN;cw*oLnp33IH5TCD8x? delta 190 zcmZn(XbIS`L5%U_VUiE&#_tHF^L5 diff --git a/tutorial/normalization-yaffe-tanay.md b/tutorial/normalization-yaffe-tanay.md index 4a306fc..e7d9eaf 100755 --- a/tutorial/normalization-yaffe-tanay.md +++ b/tutorial/normalization-yaffe-tanay.md @@ -223,8 +223,7 @@ python /HiCtool-master/scripts/HiCtool_yaffe_tanay.py \ This part is to plot the heatmap and histogram for the enrichment normalized data ("observed over expected"). The **log2 of the data** is plotted to quantify the positive enrichment (red) and the negative enrichment (blue). Loci (pixels) equal to zero before performing the log2 (deriving from zero observed contacts) are shown in gray. Loci (pixels) where enrichment expected contact was zero before performing the ratio (observed / expected) are shown in black. To plot and save the heatmap and histogram use the following code: -``` -unix +```unix python /HiCtool-master/scripts/HiCtool_yaffe_tanay.py \ --action plot_enrich \ -i HiCtool_chr6_40kb_normalized_enrich.txt \