feat: check if colnames are duplicated in R #202
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| name: R docs | |
| on: | |
| push: | |
| paths: | |
| - 'R-package/**' | |
| - 'src/**' | |
| - '.github/workflows/r_website.yml' | |
| - '!R-package/.gitignore' | |
| - '!R-package/cran-comments.md' | |
| - '!R-package/pre-release.R' | |
| - '!R-package/tests/**' | |
| - '!R-package/configure.win' | |
| - '!R-package/abess.Rproj' | |
| - '!R-package/.covrignore' | |
| pull_request: | |
| paths: | |
| - 'R-package/**' | |
| - 'src/**' | |
| - '.github/workflows/r_website.yml' | |
| - '!R-package/.gitignore' | |
| - '!R-package/cran-comments.md' | |
| - '!R-package/pre-release.R' | |
| - '!R-package/tests/**' | |
| - '!R-package/configure.win' | |
| - '!R-package/abess.Rproj' | |
| - '!R-package/.covrignore' | |
| jobs: | |
| pkgdown: | |
| name: pkgdown | |
| runs-on: macos-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.ABESS_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps("R-package", dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps("R-package", dependencies = TRUE) | |
| install.packages("pkgdown", type = "binary") | |
| install.packages("survival", type = "binary") | |
| install.packages("Hmisc", type = "binary") | |
| install.packages("ROCR", type = "binary") | |
| shell: Rscript {0} | |
| - name: Install package | |
| run: R CMD INSTALL R-package | |
| - name: Deploy package | |
| run: | | |
| Rscript -e 'pkgdown::deploy_to_branch("./R-package", new_process = FALSE, clean = TRUE)' |