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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>ChIP-seq data analysis</title>
<link rel="stylesheet" href="../../assets/reveal.js/css/reveal.css">
<link rel="stylesheet" href="../../assets/reveal.js/css/theme/simple.css" id="theme">
<!-- Code syntax highlighting -->
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<link rel="stylesheet" href="../../assets/css/slide_custom.css" id="theme">
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<body>
<div class="reveal">
<div class="slides">
<section data-markdown>
<script type="text/template">
## Welcome!
<img src="../../shared/images/GTNLogo1000.png" alt="GTNLogo1000"
class="no-border" width=30%/>
The easiest way to **navigate** this slide deck
is **by hitting `[space]` on your keyboard**
You can also navigate with arrow keys, but be careful because some
slides can be nested inside of each other (vertically)
</script>
</section>
<section data-markdown>
<script type="text/template">
# ChIP-seq data analysis
</script>
</section>
<section data-markdown>
<script type="text/template">
## Requirements
Before diving into this slide deck, <br/>
we recommend you to have a look at:
1. [NGS Quality control](../../NGS-QC/slides/index.html)
2. [NGS mapping](../../NGS-QC/slides/index.html)
</script>
</section>
<section>
<section data-markdown>
<script type="text/template">
# What is ChIP sequencing?
</script>
</section>
<section data-markdown>
<script type="text/template">
### Where my data comes from?
<img src="../images/ecker_2012.jpg" alt="Ecker et al 2012" class="no-border" width=70%/>
<small>
[*Ecker et al, Nature, 2012*](http://www.nature.com/nature/journal/v489/n7414/full/489052a.html)
</small>
</script>
</section>
<section data-markdown>
<script type="text/template">
### Chromatin immuno-precipitation
<img src="../images/szalkowski_schmid_2011.jpg" alt="Szalkowski & Schmid, Brief Bioinform, 2011" class="no-border" width=40%/>
<small>
[*Szalkowski & Schmid, Brief Bioinform, 2011*](http://bib.oxfordjournals.org/content/12/6/626.long)
</small>
</script>
</section>
</section>
<section>
<section data-markdown>
<script type="text/template">
## How to analyze ChIP-seq data?
</script>
</section>
<section data-markdown>
<script type="text/template">
### Common procedures for ChIP-seq data analysis
<img src="../images/kidder_2011.jpg" alt="Kidder et al, Nature Immunology, 2011" class="no-border" width=60%/>
<small>
[*Kidder et al, Nature Immunology, 2011*](http://www.nature.com/ni/journal/v12/n10/full/ni.2117.html)
</small>
</script>
</section>
</section>
<section data-markdown>
<script type="text/template">
### Tutorial
- [Tutorial 1](tutorial1.html)
- [Tutorial 2](tutorial1.html)
</script>
</section>
</div>
</div>
<script type="text/javascript" src="../../assets/reveal.js/lib/js/head.min.js"></script>
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