Dev-Corner

Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Here, you will find some materials to learn how to contribute to Galaxy project.

Slides

Several deck of slides are available for this topic:

• General introduction about Galaxy and development in Galaxy

• Slide deck related to the tutorials:

  • Tool development and integration into Galaxy
  • Contributing with GitHub
  • Tool Shed
  • BioBlend module, a Python library to use Galaxy API
  • Visualizations in Galaxy
  • Galaxy Interactive Tours

• Help needed for those topics:

  • Data source integration

Tutorials

• Visualizations in Galaxy

Help needed to build 2 tutorials with hands-on for this topic:

• Tool development and integration into Galaxy
• Data source integration

Galaxy instance (under construction)

For these tutorials, you can use the dedicated Docker image:

docker run -d -p 8080:80 bgruening/galaxy-dev-training

It will launch a flavored Galaxy instance available on http://localhost:8080 .

Contributors

This material is maintained by:

• Gildas Le Corguillé (@lecorguille)
• Maintainer 2

For any question related to this topic and the content, you can contact them.

The following individuals have contributed to this training material:

• Anthony Bretaudeau (@abretaud)
• Bérénice Batut (@bebatut)
• Fabien Mareuil (@fmareuil)
• Gildas Le Corguillé (@lecorguille)
• Gwendoline Andres (@gwenandres)
• Loraine Gueguen (@loraine-gueguen)
• Olivia Doppelt Azeroual (@odoppelt)
• Saskia Hiltemann (@shiltemann)
• Stephanie Le Gras (@slegras)
• Youri Hoogstrate (@yhoogstrate)