how to solve this Compiling error ?

[joanetLiew]

Hi @GhJowkar ,
Thanks a lot for developing this valuable tool.
I would love to try it out but i encountered the error below when compiling static linking.

cmake --target ARPIP -- -DCMAKE_BUILD_TYPE=Release-static CMakeLists.txt

-- The CXX compiler identification is GNU 9.4.0
-- Check for working CXX compiler: /usr/bin/g++
-- Check for working CXX compiler: /usr/bin/g++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compilation will be performed under Linux OS
-- The C compiler identification is GNU 9.4.0
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Compilation will be performed with the following release of the software:
branch refs/heads/master
ref ee32c10
time 16 Oct 2024 11:18:55
current (latest version)
-- Loading libraries & includes:
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found Boost: /home/huanle/miniconda3/lib/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: system filesystem
-- Library bpp-core found here:
/home/huanle/miniconda3/include/
/home/huanle/miniconda3/lib/libbpp-core.so
-- Library bpp-seq found here:
/home/huanle/miniconda3/include/
/home/huanle/miniconda3/lib/libbpp-seq.so
-- Library bpp-phyl found here:
/home/huanle/miniconda3/include/
/home/huanle/miniconda3/lib/libbpp-phyl.so
-- Library glog found here:
/home/huanle/miniconda3/include/
/home/huanle/miniconda3/lib/libglog.so
-- Library gtest found here:
/home/huanle/miniconda3/include/
/home/huanle/miniconda3/lib/libgtest.so
-- Linking OK
-- Targets OK
-- SRC Targets OK
-- Test OK
-- Configuring done
-- Generating done
-- Build files have been written to: /home/huanle/sw/toolkits/ASR/ARPIP/bpp-arpip

make

make[1]: Entering directory '/home/huanle/sw/toolkits/ASR/ARPIP/bpp-arpip'
make[2]: Entering directory '/home/huanle/sw/toolkits/ASR/ARPIP/bpp-arpip'
Scanning dependencies of target ARPIP
make[2]: Leaving directory '/home/huanle/sw/toolkits/ASR/ARPIP/bpp-arpip'
make[2]: Entering directory '/home/huanle/sw/toolkits/ASR/ARPIP/bpp-arpip'
[ 4%] Building CXX object CMakeFiles/ARPIP.dir/src/PIP/AncestralStateReconstruction/PIPAncestralStateReconstruction.cpp.o
In file included from /home/huanle/sw/toolkits/ASR/ARPIP/bpp-arpip/src/PIP/AncestralStateReconstruction/PIPAncestralStateReconstruction.cpp:56:
/home/huanle/sw/toolkits/ASR/ARPIP/bpp-arpip/src/PIP/AncestralStateReconstruction/PIPAncestralStateReconstruction.h:59:10: fatal error: Bpp/Phyl/AncestralStateReconstruction.h: No such file or directory
59 | #include <Bpp/Phyl/AncestralStateReconstruction.h>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/ARPIP.dir/build.make:80: CMakeFiles/ARPIP.dir/src/PIP/AncestralStateReconstruction/PIPAncestralStateReconstruction.cpp.o] Error 1
make[2]: Leaving directory '/home/huanle/sw/toolkits/ASR/ARPIP/bpp-arpip'
make[1]: *** [CMakeFiles/Makefile2:702: CMakeFiles/ARPIP.dir/all] Error 2
make[1]: Leaving directory '/home/huanle/sw/toolkits/ASR/ARPIP/bpp-arpip'
make: *** [Makefile:112: all] Error 2

Can you please help me figured out what's going wrong behind all these errors?
Thanks a lot and I look forward to your assistance.

Best Regards,
Huanle