Docker container failed to build due to missing GCC

[lanery]

Hi!

I ran into an issue when trying to build the Docker container on a Mac (running macOS Sequoia version 15.0.1). Full traceback below, but main issue I think was no GCC available. Was able to fix it by adding RUN apt-get update && apt-get install -y gcc && apt-get clean to the Dockerfile, which now looks like this:

FROM python:3.9-slim

# Install gcc
RUN apt-get update && apt-get install -y gcc && apt-get clean

RUN useradd --create-home --shell /bin/bash artist
WORKDIR /home/artist

COPY requirements.txt ./

RUN pip install --no-cache-dir -r requirements.txt

USER artist

COPY . .

CMD ["bash"]

Followed the rest of your instructions here and everything else ran smoothly, thanks!

Full traceback:

% docker-compose run --rm app
WARN[0000] /Users/ryanlane/Repositories/miniature/docker/docker-compose.yml: the attribute `version` is obsolete, it will be ignored, please remove it to avoid potential confusion 
[+] Creating 1/0
 ✔ Network docker_default  Created                                                               0.0s 
[+] Running 1/1
 ! app Warning pull access denied for my_image, repository does not exist or may...              0.7s 
[+] Building 13.3s (10/11)                                                       docker:desktop-linux
 => [app internal] load build definition from Dockerfile                                         0.0s
 => => transferring dockerfile: 285B                                                             0.0s
 => [app internal] load metadata for docker.io/library/python:3.9-slim                           1.2s
 => [app auth] library/python:pull token for registry-1.docker.io                                0.0s
 => [app internal] load .dockerignore                                                            0.0s
 => => transferring context: 2B                                                                  0.0s
 => [app 1/6] FROM docker.io/library/python:3.9-slim@sha256:4ee0613170ac55ebc693a03b6655a5c6f38  1.3s
 => => resolve docker.io/library/python:3.9-slim@sha256:4ee0613170ac55ebc693a03b6655a5c6f387126  0.0s
 => => sha256:b17061f37db52c2f236f65c6e9440d0eb28c7d593de4512f403250886e9ef9ee 250B / 250B       0.1s
 => => sha256:cd87c688b22f91a11ea5d6977744929a2cbbf7751fd1899fe1b169b0a5590be 14.83MB / 14.83MB  0.5s
 => => sha256:e88090b39a19b3e4a9f95f2a3043886f41461282cccea8072ad8f29213b9c5fa 3.14MB / 3.14MB   0.7s
 => => sha256:bb3f2b52e6af242cee1bc6c19ce79e05544f8a1d13f5a6c1e828d98d2dbdc94 28.06MB / 28.06MB  0.6s
 => => extracting sha256:bb3f2b52e6af242cee1bc6c19ce79e05544f8a1d13f5a6c1e828d98d2dbdc94e        0.4s
 => => extracting sha256:e88090b39a19b3e4a9f95f2a3043886f41461282cccea8072ad8f29213b9c5fa        0.0s
 => => extracting sha256:cd87c688b22f91a11ea5d6977744929a2cbbf7751fd1899fe1b169b0a5590be9        0.2s
 => => extracting sha256:b17061f37db52c2f236f65c6e9440d0eb28c7d593de4512f403250886e9ef9ee        0.0s
 => [app internal] load build context                                                            0.0s
 => => transferring context: 8.66kB                                                              0.0s
 => [app 2/6] RUN useradd --create-home --shell /bin/bash artist                                 0.2s
 => [app 3/6] WORKDIR /home/artist                                                               0.0s
 => [app 4/6] COPY requirements.txt ./                                                           0.0s
 => ERROR [app 5/6] RUN pip install --no-cache-dir -r requirements.txt                          10.5s
------
 > [app 5/6] RUN pip install --no-cache-dir -r requirements.txt:
1.030 Collecting colormath==3.0.0
1.110   Downloading colormath-3.0.0.tar.gz (39 kB)
1.122   Preparing metadata (setup.py): started
1.265   Preparing metadata (setup.py): finished with status 'done'
1.430 Collecting matplotlib
1.442   Downloading matplotlib-3.9.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (8.2 MB)
1.551      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.2/8.2 MB 77.5 MB/s eta 0:00:00
1.733 Collecting numpy
1.745   Downloading numpy-2.0.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (13.9 MB)
1.892      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.9/13.9 MB 95.6 MB/s eta 0:00:00
1.968 Collecting scikit-image
1.978   Downloading scikit_image-0.24.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (14.2 MB)
2.130      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 14.2/14.2 MB 98.7 MB/s eta 0:00:00
2.226 Collecting scikit-learn
2.237   Downloading scikit_learn-1.5.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (12.5 MB)
2.364      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.5/12.5 MB 100.0 MB/s eta 0:00:00
2.424 Collecting tifffile
2.434   Downloading tifffile-2024.8.30-py3-none-any.whl (227 kB)
2.437      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 227.3/227.3 kB 318.4 MB/s eta 0:00:00
2.458 Collecting umap-learn
2.467   Downloading umap_learn-0.5.7-py3-none-any.whl (88 kB)
2.469      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 88.8/88.8 kB 323.0 MB/s eta 0:00:00
2.501 Collecting zarr
2.512   Downloading zarr-2.18.2-py3-none-any.whl (210 kB)
2.514      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 210.2/210.2 kB 347.0 MB/s eta 0:00:00
2.573 Collecting imagecodecs
2.584   Downloading imagecodecs-2024.9.22-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (42.1 MB)
2.996      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.1/42.1 MB 104.5 MB/s eta 0:00:00
3.037 Collecting argparse
3.046   Downloading argparse-1.4.0-py2.py3-none-any.whl (23 kB)
3.098 Collecting h5py
3.108   Downloading h5py-3.12.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (5.2 MB)
3.161      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.2/5.2 MB 106.5 MB/s eta 0:00:00
3.194 Collecting networkx>=2.0
3.204   Downloading networkx-3.2.1-py3-none-any.whl (1.6 MB)
3.221      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 99.3 MB/s eta 0:00:00
3.252 Collecting cycler>=0.10
3.261   Downloading cycler-0.12.1-py3-none-any.whl (8.3 kB)
3.297 Collecting importlib-resources>=3.2.0
3.306   Downloading importlib_resources-6.4.5-py3-none-any.whl (36 kB)
3.367 Collecting kiwisolver>=1.3.1
3.378   Downloading kiwisolver-1.4.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (1.4 MB)
3.393      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 96.7 MB/s eta 0:00:00
3.467 Collecting contourpy>=1.0.1
3.480   Downloading contourpy-1.3.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (309 kB)
3.485      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 309.2/309.2 kB 116.7 MB/s eta 0:00:00
3.651 Collecting pillow>=8
3.661   Downloading pillow-11.0.0-cp39-cp39-manylinux_2_28_aarch64.whl (4.2 MB)
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3.739 Collecting pyparsing>=2.3.1
3.748   Downloading pyparsing-3.2.0-py3-none-any.whl (106 kB)
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3.777 Collecting packaging>=20.0
3.787   Downloading packaging-24.2-py3-none-any.whl (65 kB)
3.788      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.5/65.5 kB 495.3 MB/s eta 0:00:00
3.811 Collecting python-dateutil>=2.7
3.820   Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
3.823      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 229.9/229.9 kB 172.9 MB/s eta 0:00:00
3.951 Collecting fonttools>=4.22.0
3.962   Downloading fonttools-4.55.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (4.6 MB)
4.022      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 77.3 MB/s eta 0:00:00
4.145 Collecting scipy>=1.9
4.155   Downloading scipy-1.13.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (33.7 MB)
4.789      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 33.7/33.7 MB 58.5 MB/s eta 0:00:00
4.852 Collecting imageio>=2.33
4.863   Downloading imageio-2.36.1-py3-none-any.whl (315 kB)
4.867      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 315.4/315.4 kB 99.7 MB/s eta 0:00:00
4.890 Collecting lazy-loader>=0.4
4.900   Downloading lazy_loader-0.4-py3-none-any.whl (12 kB)
4.957 Collecting joblib>=1.2.0
4.966   Downloading joblib-1.4.2-py3-none-any.whl (301 kB)
4.970      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 301.8/301.8 kB 92.6 MB/s eta 0:00:00
4.994 Collecting threadpoolctl>=3.1.0
5.004   Downloading threadpoolctl-3.5.0-py3-none-any.whl (18 kB)
5.043 Collecting pynndescent>=0.5
5.053   Downloading pynndescent-0.5.13-py3-none-any.whl (56 kB)
5.054      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.9/56.9 kB 351.2 MB/s eta 0:00:00
5.103 Collecting tqdm
5.113   Downloading tqdm-4.67.1-py3-none-any.whl (78 kB)
5.114      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.5/78.5 kB 442.5 MB/s eta 0:00:00
5.221 Collecting numba>=0.51.2
5.231   Downloading numba-0.60.0-cp39-cp39-manylinux2014_aarch64.manylinux_2_17_aarch64.whl (3.4 MB)
5.295      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.4/3.4 MB 58.2 MB/s eta 0:00:00
5.342 Collecting asciitree
5.352   Downloading asciitree-0.3.3.tar.gz (4.0 kB)
5.354   Preparing metadata (setup.py): started
5.422   Preparing metadata (setup.py): finished with status 'done'
5.468 Collecting numcodecs>=0.10.0
5.586   Downloading numcodecs-0.12.1.tar.gz (4.1 MB)
5.844      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.1/4.1 MB 16.1 MB/s eta 0:00:00
6.037   Installing build dependencies: started
7.821   Installing build dependencies: finished with status 'done'
7.822   Getting requirements to build wheel: started
8.013   Getting requirements to build wheel: finished with status 'done'
8.014   Preparing metadata (pyproject.toml): started
8.181   Preparing metadata (pyproject.toml): finished with status 'done'
8.206 Collecting fasteners
8.215   Downloading fasteners-0.19-py3-none-any.whl (18 kB)
8.315 Collecting zipp>=3.1.0
8.324   Downloading zipp-3.21.0-py3-none-any.whl (9.6 kB)
8.405 Collecting llvmlite<0.44,>=0.43.0dev0
8.415   Downloading llvmlite-0.43.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (42.9 MB)
9.412      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.9/42.9 MB 50.4 MB/s eta 0:00:00
9.512 Collecting six>=1.5
9.521   Downloading six-1.17.0-py2.py3-none-any.whl (11 kB)
9.568 Building wheels for collected packages: colormath, numcodecs, asciitree
9.568   Building wheel for colormath (setup.py): started
9.696   Building wheel for colormath (setup.py): finished with status 'done'
9.696   Created wheel for colormath: filename=colormath-3.0.0-py3-none-any.whl size=39407 sha256=e76d946d031a58fde582a27f5c395591f8c5ed8534c7e920d87fa3e781d82de1
9.696   Stored in directory: /tmp/pip-ephem-wheel-cache-5z8s6bfp/wheels/41/fc/b0/725cea6b023e17948a084b1111b4941299859d468c4407e01d
9.699   Building wheel for numcodecs (pyproject.toml): started
10.18   Building wheel for numcodecs (pyproject.toml): finished with status 'error'
10.19   error: subprocess-exited-with-error
10.19   
10.19   × Building wheel for numcodecs (pyproject.toml) did not run successfully.
10.19   │ exit code: 1
10.19   ╰─> [234 lines of output]
10.19       [numcodecs] setting up Blosc extension
10.19       [numcodecs] compiling Blosc extension without SSE2 support
10.19       [numcodecs] compiling Blosc extension without AVX2 support
10.19       [numcodecs] setting up Zstandard extension
10.19       [numcodecs] setting up LZ4 extension
10.19       [numcodecs] setting up compat extension
10.19       [numcodecs] setting up shuffle extension
10.19       [numcodecs] setting up vlen extension
10.19       [numcodecs] setting up fletcher32 extension
10.19       [numcodecs] setting up jenkins extension
10.19       running bdist_wheel
10.19       running build
10.19       running build_py
10.19       creating build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/ndarray_like.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/pickles.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/fixedscaleoffset.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/delta.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/bz2.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/bitround.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/lzma.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/zlib.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/packbits.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/__init__.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/categorize.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/shuffle.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/checksum32.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/astype.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/quantize.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/abc.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/compat.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/json.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/gzip.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/zfpy.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/base64.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/registry.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/msgpacks.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       copying ./numcodecs/version.py -> build/lib.linux-aarch64-cpython-39/numcodecs
10.19       creating build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_registry.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_zstd.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_vlen_bytes.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_ndarray_like.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_shuffle.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_msgpacks.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_astype.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_json.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_packbits.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_lz4.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_vlen_array.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_categorize.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_compat.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/__init__.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_zlib.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_delta.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_jenkins.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/common.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_lzma.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_pickles.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_base64.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_zfpy.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_gzip.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_fletcher32.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_fixedscaleoffset.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_checksum32.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_blosc.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_bz2.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_bitround.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_quantize.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_vlen_utf8.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_entrypoints_backport.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       copying ./numcodecs/tests/test_entrypoints.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests
10.19       running egg_info
10.19       writing numcodecs.egg-info/PKG-INFO
10.19       writing dependency_links to numcodecs.egg-info/dependency_links.txt
10.19       writing requirements to numcodecs.egg-info/requires.txt
10.19       writing top-level names to numcodecs.egg-info/top_level.txt
10.19       reading manifest file 'numcodecs.egg-info/SOURCES.txt'
10.19       reading manifest template 'MANIFEST.in'
10.19       adding license file 'LICENSE.txt'
10.19       writing manifest file 'numcodecs.egg-info/SOURCES.txt'
10.19       /tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'numcodecs.tests.package_with_entrypoint' is absent from the `packages` configuration.
10.19       !!
10.19       
10.19               ********************************************************************************
10.19               ############################
10.19               # Package would be ignored #
10.19               ############################
10.19               Python recognizes 'numcodecs.tests.package_with_entrypoint' as an importable package[^1],
10.19               but it is absent from setuptools' `packages` configuration.
10.19       
10.19               This leads to an ambiguous overall configuration. If you want to distribute this
10.19               package, please make sure that 'numcodecs.tests.package_with_entrypoint' is explicitly added
10.19               to the `packages` configuration field.
10.19       
10.19               Alternatively, you can also rely on setuptools' discovery methods
10.19               (for example by using `find_namespace_packages(...)`/`find_namespace:`
10.19               instead of `find_packages(...)`/`find:`).
10.19       
10.19               You can read more about "package discovery" on setuptools documentation page:
10.19       
10.19               - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
10.19       
10.19               If you don't want 'numcodecs.tests.package_with_entrypoint' to be distributed and are
10.19               already explicitly excluding 'numcodecs.tests.package_with_entrypoint' via
10.19               `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
10.19               you can try to use `exclude_package_data`, or `include-package-data=False` in
10.19               combination with a more fine grained `package-data` configuration.
10.19       
10.19               You can read more about "package data files" on setuptools documentation page:
10.19       
10.19               - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
10.19       
10.19       
10.19               [^1]: For Python, any directory (with suitable naming) can be imported,
10.19                     even if it does not contain any `.py` files.
10.19                     On the other hand, currently there is no concept of package data
10.19                     directory, all directories are treated like packages.
10.19               ********************************************************************************
10.19       
10.19       !!
10.19         check.warn(importable)
10.19       creating build/lib.linux-aarch64-cpython-39/numcodecs/tests/package_with_entrypoint
10.19       copying ./numcodecs/tests/package_with_entrypoint/__init__.py -> build/lib.linux-aarch64-cpython-39/numcodecs/tests/package_with_entrypoint
10.19       creating build/lib.linux-aarch64-cpython-39/numcodecs/tests/package_with_entrypoint-0.1.dist-info
10.19       copying ./numcodecs/tests/package_with_entrypoint-0.1.dist-info/entry_points.txt -> build/lib.linux-aarch64-cpython-39/numcodecs/tests/package_with_entrypoint-0.1.dist-info
10.19       running build_ext
10.19       Compiling numcodecs/blosc.pyx because it changed.
10.19       [1/1] Cythonizing numcodecs/blosc.pyx
10.19       building 'numcodecs.blosc' extension
10.19       creating build/temp.linux-aarch64-cpython-39/c-blosc/blosc
10.19       creating build/temp.linux-aarch64-cpython-39/c-blosc/internal-complibs/lz4-1.9.3
10.19       creating build/temp.linux-aarch64-cpython-39/c-blosc/internal-complibs/zlib-1.2.8
10.19       creating build/temp.linux-aarch64-cpython-39/c-blosc/internal-complibs/zstd-1.4.8/common
10.19       creating build/temp.linux-aarch64-cpython-39/c-blosc/internal-complibs/zstd-1.4.8/compress
10.19       creating build/temp.linux-aarch64-cpython-39/c-blosc/internal-complibs/zstd-1.4.8/decompress
10.19       creating build/temp.linux-aarch64-cpython-39/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder
10.19       creating build/temp.linux-aarch64-cpython-39/numcodecs
10.19       gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/local/include/python3.9 -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.linux-aarch64-cpython-39/c-blosc/blosc/bitshuffle-generic.o
10.19       [numcodecs] command 'gcc' failed: No such file or directory
10.19       Traceback (most recent call last):
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/spawn.py", line 70, in spawn
10.19           subprocess.check_call(cmd, env=_inject_macos_ver(env))
10.19         File "/usr/local/lib/python3.9/subprocess.py", line 368, in check_call
10.19           retcode = call(*popenargs, **kwargs)
10.19         File "/usr/local/lib/python3.9/subprocess.py", line 349, in call
10.19           with Popen(*popenargs, **kwargs) as p:
10.19         File "/usr/local/lib/python3.9/subprocess.py", line 951, in __init__
10.19           self._execute_child(args, executable, preexec_fn, close_fds,
10.19         File "/usr/local/lib/python3.9/subprocess.py", line 1837, in _execute_child
10.19           raise child_exception_type(errno_num, err_msg, err_filename)
10.19       FileNotFoundError: [Errno 2] No such file or directory: 'gcc'
10.19       
10.19       The above exception was the direct cause of the following exception:
10.19       
10.19       Traceback (most recent call last):
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/unixccompiler.py", line 200, in _compile
10.19           self.spawn(compiler_so + cc_args + [src, '-o', obj] + extra_postargs)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/ccompiler.py", line 1045, in spawn
10.19           spawn(cmd, dry_run=self.dry_run, **kwargs)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/spawn.py", line 72, in spawn
10.19           raise DistutilsExecError(
10.19       distutils.errors.DistutilsExecError: command 'gcc' failed: No such file or directory
10.19       
10.19       During handling of the above exception, another exception occurred:
10.19       
10.19       Traceback (most recent call last):
10.19         File "<string>", line 308, in build_extension
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/Cython/Distutils/build_ext.py", line 135, in build_extension
10.19           super(build_ext, self).build_extension(ext)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 557, in build_extension
10.19           objects = self.compiler.compile(
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/ccompiler.py", line 606, in compile
10.19           self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/unixccompiler.py", line 202, in _compile
10.19           raise CompileError(msg)
10.19       distutils.errors.CompileError: command 'gcc' failed: No such file or directory
10.19       
10.19       During handling of the above exception, another exception occurred:
10.19       
10.19       Traceback (most recent call last):
10.19         File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
10.19           main()
10.19         File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
10.19           json_out['return_val'] = hook(**hook_input['kwargs'])
10.19         File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel
10.19           return _build_backend().build_wheel(wheel_directory, config_settings,
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 438, in build_wheel
10.19           return _build(['bdist_wheel', '--dist-info-dir', str(metadata_directory)])
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 426, in _build
10.19           return self._build_with_temp_dir(
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 407, in _build_with_temp_dir
10.19           self.run_setup()
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 320, in run_setup
10.19           exec(code, locals())
10.19         File "<string>", line 335, in <module>
10.19         File "<string>", line 326, in run_setup
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 117, in setup
10.19           return distutils.core.setup(**attrs)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 183, in setup
10.19           return run_commands(dist)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 199, in run_commands
10.19           dist.run_commands()
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 954, in run_commands
10.19           self.run_command(cmd)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 995, in run_command
10.19           super().run_command(command)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 973, in run_command
10.19           cmd_obj.run()
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/command/bdist_wheel.py", line 381, in run
10.19           self.run_command("build")
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
10.19           self.distribution.run_command(command)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 995, in run_command
10.19           super().run_command(command)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 973, in run_command
10.19           cmd_obj.run()
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 135, in run
10.19           self.run_command(cmd_name)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
10.19           self.distribution.run_command(command)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 995, in run_command
10.19           super().run_command(command)
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 973, in run_command
10.19           cmd_obj.run()
10.19         File "<string>", line 301, in run
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 359, in run
10.19           self.build_extensions()
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 476, in build_extensions
10.19           self._build_extensions_serial()
10.19         File "/tmp/pip-build-env-c7tysa1h/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py", line 502, in _build_extensions_serial
10.19           self.build_extension(ext)
10.19         File "<string>", line 311, in build_extension
10.19       __main__.BuildFailed
10.19       [end of output]
10.19   
10.19   note: This error originates from a subprocess, and is likely not a problem with pip.
10.19   ERROR: Failed building wheel for numcodecs
10.19   Building wheel for asciitree (setup.py): started
10.28   Building wheel for asciitree (setup.py): finished with status 'done'
10.28   Created wheel for asciitree: filename=asciitree-0.3.3-py3-none-any.whl size=5050 sha256=cd09b1d6c483ca6c200f839e73ba00dbf19a6baa085af24a23ae76f155d366e2
10.28   Stored in directory: /tmp/pip-ephem-wheel-cache-5z8s6bfp/wheels/07/00/bc/937e878be0d781a569792a1e0e5acf149e463d4536453ec978
10.28 Successfully built colormath asciitree
10.28 Failed to build numcodecs
10.28 ERROR: Could not build wheels for numcodecs, which is required to install pyproject.toml-based projects
10.36 
10.36 [notice] A new release of pip is available: 23.0.1 -> 24.3.1
10.36 [notice] To update, run: pip install --upgrade pip
------
failed to solve: process "/bin/sh -c pip install --no-cache-dir -r requirements.txt" did not complete successfully: exit code: 1