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snomed-rdf

Link SNOMED CT terminology using RDF for semantic data integration.

Usage via Docker

  • Clone this repository:
git clone https://github.com/adem/snomed-rdf.git && cd snomed-rdf
  • Run the Docker container:
docker compose up -d
  • Perform an example query:
curl -X POST http://localhost:8000/api/snomed-ct \
     -H 'Content-Type: application/sparql-query' \
     -d @examples/ct-of-thorax-synonyms.sparql
  • Perform queries via the locally running web UI.

Caveats

The input data provided in data/snomed-ct.csv is a very small subset of the file sct2_Description_Full-en_INT_20240501.txt terminology dataset, converted to be comma-separated, provided in the SNOMED CT International Edition release.

The full version can be obtained at https://mlds.ihtsdotools.org via an MLDS license. You may place the full version of the file in data/snomed-ct.csv instead.

To-dos

  • Extend RML mapping to more fields such as description
  • Investigate snomed-owl-toolkit
  • Provide a basic web UI