Fix Data Quality Components (#678)

* Add precision dropdown to date object * Refactor Date and Datetime Components Handling precision. * Update package.json version to 1.4.0-beta.16 * Update package.json version to 1.4.0-beta.16 * chore: Update package.json version to 1.5.0-beta.1 * Update package.json version to 1.5.0-beta.7 * Add "Reference" to Evaluation Procedure Also code formatting single quote to double quote * Revert to single quotes * Refactor .prettierrc.js to use single quotes for consistency * chore: Update alert styling in md-standalone-quality-report template * Refactor md-quality-report templates to use model.name for input value * feat: Update md-quality-report template to use quantitativeValue for input value * chore: Bump version to 1.5.0-beta.5 in package.json * chore: Remove console.log statement in md-datetime component * chore: Update mdcodes and mdjson-schemas dependencies to latest beta versions * chore: Bump version to 1.5.0-beta.10 in package.json * Refactor md-quality-report templates to use model.name for input value * chore: Update mdjson-schemas dependency to version 2.9.2-beta.19 * chore: Update mdjson-schemas and mdcodes dependencies to latest beta versions * Refactor md-codelist component to remove console.log statement * chore: Update mdjson-schemas and mdcodes dependencies to latest beta versions * Revert changes * chore: Bump version to 1.5.0-beta.13 in package.json * chore: Update mdcodes and mdjson-schemas dependencies to latest stable versions * chore: Update mdcodes and mdjson-schemas dependencies to latest beta versions * chore: Bump version to 1.5.0-beta.15 in package.json * chore: Bump version to 1.6.0-beta.0 in package.json * feat: Add Simple HTML option to the translator dropdown * chore: Bump version to 1.5.0-beta.16 in package.json * chore: Update mdcodes and mdjson-schemas dependencies to latest beta versions * Updates Fix Lineage Source Citation Identitfier - set simpleIdentifier to true Add identification reference to taxonomy collection Remove modifications from system preview * Require standalone quality report reference * chore: Update versions mdJson-schemas to v2.9.3-beta.3 mdCodes to v2.9.4-beta.4 * Add "on <today's date>" to Taxonomy System->Citation->Other Details * Fix typo * Fix Input Codelist not string * feat: Update md-datetime component to use single quotes consistently * Update md-datetime component to use single quotes consistently * Update md-datetime component to use single quotes consistently * Remove modifications from system preview template * chore: Bump version to 1.5.0-beta.19 in package.json * Remove modifications from system preview template * Update md-datetime component to use single quotes consistently * chore: Bump version to 1.5.0-beta.20 in package.json * Update md-datetime component to use ISO 8601 format consistently * chore: Bump version to 1.5.0-beta.25 in package.json * chore: Update npm dependencies to latest versions * Add precision control to date range * chore: Bump version to 1.5.0-beta.26 in package.json * feat: Add Altitude Min/Max and Units Inputs to Bounding Box * chore: Bump version to 1.5.0-beta.27 in package.json
adiwg · Jul 1, 2024 · 9b713e5 · 9b713e5
1 parent 736074c
commit 9b713e5
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Showing 26 changed files with 767 additions and 462 deletions.
diff --git a/.prettierrc.js b/.prettierrc.js
@@ -0,0 +1,5 @@
+"use strict";
+
+module.exports = {
+  singleQuote: true,
+};
diff --git a/app/pods/components/control/md-itis/component.js b/app/pods/components/control/md-itis/component.js
@@ -1,30 +1,12 @@
 import Component from '@ember/component';
-import {
-  inject as service
-} from '@ember/service';
-import {
-  computed,
-  set,
-  get,
-  getWithDefault
-} from '@ember/object';
-import {
-  or
-} from '@ember/object/computed';
-import {
-  isArray,
-  A
-} from '@ember/array';
-import {
-  later
-} from '@ember/runloop';
-import {
-  assert
-} from '@ember/debug';
+import { inject as service } from '@ember/service';
+import { computed, set, get, getWithDefault } from '@ember/object';
+import { or } from '@ember/object/computed';
+import { isArray, A } from '@ember/array';
+import { later } from '@ember/runloop';
+import { assert } from '@ember/debug';
 import moment from 'moment';
-import {
-  formatCitation
-} from '../../object/md-citation/component';
+import { formatCitation } from '../../object/md-citation/component';
 
 export default Component.extend({
   init() {
@@ -61,19 +43,20 @@ export default Component.extend({
     this.set('isLoading', true);
     this.set('searchResult', null);
 
-    itis.sendQuery(this.searchString, this.kingdom, this.limit).then(response => {
-
-      if(!response) {
-        return;
-      }
+    itis
+      .sendQuery(this.searchString, this.kingdom, this.limit)
+      .then((response) => {
+        if (!response) {
+          return;
+        }
 
-      let docs = response.response.docs;
-      let data = docs.map(doc => itis.parseDoc(doc));
+        let docs = response.response.docs;
+        let data = docs.map((doc) => itis.parseDoc(doc));
 
-      this.set('searchResult', data);
-      this.set('total', response.response.numFound);
-      this.set('isLoading', false);
-    });
+        this.set('searchResult', data);
+        this.set('total', response.response.numFound);
+        this.set('isLoading', false);
+      });
   },
   actions: {
     search() {
@@ -82,58 +65,81 @@ export default Component.extend({
     selectItem(item) {
       item.set('animate', true);
       item.set('selected', true);
-      later(this, function () {
-        this.searchResult.removeObject(item);
-        this.selected.pushObject(item);
-      }, 250);
+      later(
+        this,
+        function () {
+          this.searchResult.removeObject(item);
+          this.selected.pushObject(item);
+        },
+        250
+      );
     },
     deselectItem(item) {
       item.set('selected', false);
-      later(this, function () {
-        this.selected.removeObject(item);
-        this.searchResult.pushObject(item);
-      }, 250);
+      later(
+        this,
+        function () {
+          this.selected.removeObject(item);
+          this.searchResult.pushObject(item);
+        },
+        250
+      );
     },
     importTaxa(taxa) {
       let taxonomy = this.taxonomy;
       let itisCitation = this.get('itis.citation');
 
-      let classification = set(taxonomy, 'taxonomicClassification', getWithDefault(taxonomy,
-        'taxonomicClassification', []));
-      let systems= set(taxonomy, 'taxonomicSystem', getWithDefault(taxonomy,
-        'taxonomicSystem', [{citation:{}}]));
-      let system = systems.findBy('citation.title', get(itisCitation,'title'));
-
-      let allTaxa = taxa.reduce((acc, itm) => acc.pushObjects(itm.taxonomy), []);
+      let classification = set(
+        taxonomy,
+        'taxonomicClassification',
+        getWithDefault(taxonomy, 'taxonomicClassification', [])
+      );
+      let systems = set(
+        taxonomy,
+        'taxonomicSystem',
+        getWithDefault(taxonomy, 'taxonomicSystem', [{ citation: {} }])
+      );
+      let system = systems.findBy('citation.title', get(itisCitation, 'title'));
+
+      let allTaxa = taxa.reduce(
+        (acc, itm) => acc.pushObjects(itm.taxonomy),
+        []
+      );
       let today = moment().format('YYYY-MM-DD');
       let dateObj = {
         date: today,
         dateType: 'transmitted',
-        description: 'Taxa imported from ITIS'
+        description: 'Taxa imported from ITIS',
       };
+      itisCitation.otherCitationDetails = [
+        `Retrieved from the Integrated Taxonomic Information System on-line database, https://www.itis.gov on ${today}.`,
+      ];
 
-      allTaxa.forEach(itm => this.itis.mergeTaxa(itm, classification));
+      allTaxa.forEach((itm) => this.itis.mergeTaxa(itm, classification));
 
-      if(!system) {
+      if (!system) {
         itisCitation.get('date').pushObject(dateObj);
         systems.pushObject({
-          citation: itisCitation
+          citation: itisCitation,
         });
       } else {
-        let citation = set(system, 'citation', getWithDefault(system,'citation', {}));
+        let citation = set(
+          system,
+          'citation',
+          getWithDefault(system, 'citation', {})
+        );
         formatCitation(citation);
 
         let date = A(get(citation, 'date'));
 
-        if(!date.findBy('date', today)) {
+        if (!date.findBy('date', today)) {
           date.pushObject(dateObj);
         }
       }
 
-      this.flashMessages
-        .success(
-          `Successfully imported ${ allTaxa.length } taxa from ITIS.`
-        );
-    }
-  }
+      this.flashMessages.success(
+        `Successfully imported ${allTaxa.length} taxa from ITIS.`
+      );
+    },
+  },
 });
diff --git a/app/pods/components/input/md-codelist/component.js b/app/pods/components/input/md-codelist/component.js
@@ -40,13 +40,15 @@ export default Select.extend({
     this._super(...arguments);
 
     //define cp using a dynamic dependent property
-    defineProperty(this, 'mdCodelist',
+    defineProperty(
+      this,
+      'mdCodelist',
       computed(`mdCodes.${this.mdCodeName}.codelist.[]`, function () {
-        return this.mdCodes
-          .get(this.mdCodeName)
-          .codelist
-          //.uniqBy(codeName)
-          .sortBy(this.namePath);
+        const codelist = this.mdCodes.get(this.mdCodeName).codelist;
+        if (this.disableSort) {
+          return codelist;
+        }
+        return codelist.sortBy(this.namePath);
       })
     );
   },
@@ -118,7 +120,7 @@ export default Select.extend({
    * @type String
    * @default 'Select one option'
    */
-  placeholder: "Select one option",
+  placeholder: 'Select one option',
 
   /**
    * Form label for select list
@@ -141,10 +143,9 @@ export default Select.extend({
   selectedItem: computed('value', function () {
     let value = this.value;
 
-    return this.codelist
-      .find((item) => {
-        return item['codeId'] === value;
-      });
+    return this.codelist.find((item) => {
+      return item['codeId'] === value;
+    });
   }),
 
   // mdCodelist: computed('mdCodeName', function() {
@@ -176,11 +177,12 @@ export default Select.extend({
     this.mdCodelist.forEach((item) => {
       let newObject = {
         codeId: item[codeId],
-        codeName: this.mdCodes.get(
-            `codeOverrides.${this.mdCodeName}.${item[codeName]}`) ||
-          item[codeName],
+        codeName:
+          this.mdCodes.get(
+            `codeOverrides.${this.mdCodeName}.${item[codeName]}`
+          ) || item[codeName],
         tooltip: item[tooltip],
-        icon: icons.get(item[codeName]) || icons.get(defaultIcon)
+        icon: icons.get(item[codeName]) || icons.get(defaultIcon),
       };
       codelist.pushObject(newObject);
     });
@@ -203,10 +205,10 @@ export default Select.extend({
     let create = this.create;
     let filter = this.filterId;
 
-    if(value) {
-      if(create) {
+    if (value) {
+      if (create) {
         let found = codelist.findBy('codeId', value);
-        if(found === undefined) {
+        if (found === undefined) {
           let newObject = this.createCode(value);
           codelist.pushObject(newObject);
         }
@@ -227,7 +229,7 @@ export default Select.extend({
     return {
       codeId: code,
       codeName: code,
-      description: 'Undefined'
+      description: 'Undefined',
     };
   },
 
@@ -259,7 +261,6 @@ export default Select.extend({
       let code = this.createCode(selected);
 
       this.setValue(code);
-    }
-  }
-
+    },
+  },
 });