palmotif

Python package for computing and plotting sequence logos, with output as SVG or matplotlib

Credit to developers of more sophisticated LogoJS for the SVG alphabet in this package.

Color schemes are derived from those in weblogo

Examples

from palmotif import compute_motif, svg_logo
motif = compute_motif(seqs)
svg_logo(motif, 'test.svg', color_scheme='taylor')

• Protein or DNA sequence logos
• Allows negative values
• Shapely color scheme
• Taylor color scheme