- Add a new vignette with all the packages used to develop the diveRpine.
-
Init parameters:
- init_params.R script was removed from the app. The parameters were located at different functions or files.
- The new function
create_landscape()
creates an empty landscape - old
nf_value
specified at init_params were set by default to 2 in the functionsdist2nf()
,potential_dispersion()
. - old
pp_value
specified at init_params were set by default to 1 in the functionspotential_dispersion()
, andinput_progagule()
. - A block of code with some initialize parameters was added to
server.R
of the shinyapp. ri_range
, i.e. the minimum and maximum values of plant richness in each of the landscape class are incorporated in the functioninitRichness()
. In the app the default values of this dataframe was used for the study area (Sierra Nevada, southern Spain).
-
The documentation of functions has been updated and improved.
-
A new module has been implemented in the app to incorporate the climate-proxy functions, using the equation from Gómez-Aparicio et al. (2009)
-
Several vignettes are added containing detailed manual of how diveRpine runs.
- fix minor typo on code comments of the functions
- Evaluates and set default arguments in
dist2nf()
,initRichness()
,input_progagule()
,potential_dispersion()
. - Improve the vignette of supporting references (using a
.bib
file).
- Remove functions
createLandscape()
,disper()
, anddisper_time()
. - Put some functions as code snippets of the shiny app.
- Include new functions:
plot_landscape()
,plot_progagule()
;plot_richness()
,potential_dispersion()
- Add error standards for the richness values of the pine plantation
- Include new computation code for dispersion module. See
potential_dispersion()
.
- Change name to diveRpine (diversification of pine plantation)
- Improve documentation of all functioms
- Add namespace of several functions, e.g.:
as()
tomethods::as()
-
fix minor typo on code comments in initRichness.R
-
createLandscape.R:
- remove code block commented
- improve code styling
- improve code comments
- change ratify factor levels
-
Improve function documentation
- Release app for academic purposes (respineDocencia)