Releases: akhanf/snakedwi
Releases · akhanf/snakedwi
0.2.1
Changes
🚀 Features
- Add synb0 sdc method @kaitj (#58)
- CLI, QC, resource, and motion-correction updates @pvandyken (#59)
- Alternate method for SDC @kaitj (#55)
- Incorporate new qc-viewer app @pvandyken (#61)
Maintenance
Contributors
kaitj and pvandyken
Assets 2
v0.2.0-alpha
What's Changed
- Update get_phase_encode_txt.py by @Bradley-Karat in #31
- linting fix, check wasn't run on the PR by @akhanf in #38
- Rigid init option by @akhanf in #39
- fixes earlier PR on get_phase_encode_txt that broke this by @akhanf in #40
- motion-correction for b0s when not using topup by @akhanf in #43
- change default iters for reg_dwi_to_t1, add cli opt by @akhanf in #42
- update config to add value for new CLI options by @akhanf in #44
- Syn sdc fieldmap-less correction + synthstrip brain-masking by @akhanf in #45
- refactoring, checkpoints for automatically configuring sdc and eddy options per subjet by @akhanf in #48
- SynthSR+SyN for fieldmap-less distortion correction by @akhanf in #50
- Gradcorrect by @pvandyken in #24
- automated selection of dwi scans, intersection of t1 and dwi zip lists, metadata summary files by @akhanf in #52
- synthSR dwi-t1 reg, motioncorr, new test datasets by @akhanf in #53
New Contributors
- @Bradley-Karat made their first contribution in #31
- @pvandyken made their first contribution in #24
Full Changelog: v0.1.0-alpha...v0.2.0-alpha
Contributors
akhanf, Bradley-Karat, and pvandyken
Assets 2
v0.1.0-alpha
What's Changed
- major updates by @akhanf in #1
- Snakebids by @akhanf in #2
- updates for snakebids 0.2.1, docs, packaging by @akhanf in #3
- Brain masking and tidying up by @akhanf in #5
- Update get_shells_from_bvals.py by @akhanf in #7
- updated to latest snakebids by @akhanf in #8
- Bestprac submission by @akhanf in #9
- fixed a couple bugs by @akhanf in #10
- updated dwi-t1 reg, other bug fixes by @akhanf in #11
- patch to get workflow working with ziplists as tuples by @akhanf in #12
- poetry for deps by @akhanf in #13
- updates to get dryrun test working by @akhanf in #18
- various fixes and enhancements for bedpost & eddy/eddyqc by @akhanf in #15
- Bump pillow from 8.4.0 to 9.0.1 by @dependabot in #19
- added option for custom slspec txt file by @akhanf in #14
- added chmod to rotate_bvecs_to_t1w by @akhanf in #22
- refactoring by @akhanf in #23
- Check json metadata by @akhanf in #29
- fix typo in bedpost rule by @akhanf in #32
- add missing container for eddy_openmp by @akhanf in #33
- Fsl containers clean-up by @akhanf in #34
- Another container fix for graham by @akhanf in #35
- yet another fsl container & gpu fix by @akhanf in #36
- fix for singularity --home, move qc to datatype by @akhanf in #37
New Contributors
- @akhanf made their first contribution in #1
- @dependabot made their first contribution in #19
Full Changelog: https://github.com/akhanf/snakedwi/commits/v0.1.0-alpha
Contributors
akhanf and dependabot