perl-package-build.yml

name: Build Bystro Perl Package

on: [push, pull_request]

jobs:
  test-perl-package:
    runs-on: ubuntu-latest
    container:
      image: perldocker/perl-tester:latest

    steps:
      - name: Perl version
        run: perl -V

      - name: Install system dependencies
        shell: bash
        run: apt-get install --no-install-recommends -y lz4

      # taken from https://github.com/docker-library/golang/blob/master/1.21/bullseye/Dockerfile
      # NOTES: 1) updated paths are not usable by the step
      #        2) if GOBIN is not set, which is the case here, `go install ...` installs binaries to ${HOME}/go/bin
      - name: Install Go
        shell: bash
        run: |
          set -eux; \
          arch="$(dpkg --print-architecture)"; arch="${arch##*-}"; \
          url=; \
          case "$arch" in \
            'amd64') \
              url='https://dl.google.com/go/go1.21.3.linux-amd64.tar.gz'; \
              sha256='1241381b2843fae5a9707eec1f8fb2ef94d827990582c7c7c32f5bdfbfd420c8'; \
              ;; \
            'armel') \
              export GOARCH='arm' GOARM='5' GOOS='linux'; \
              ;; \
            'armhf') \
              url='https://dl.google.com/go/go1.21.3.linux-armv6l.tar.gz'; \
              sha256='a1ddcaaf0821a12a800884c14cb4268ce1c1f5a0301e9060646f1e15e611c6c7'; \
              ;; \
            'arm64') \
              url='https://dl.google.com/go/go1.21.3.linux-arm64.tar.gz'; \
              sha256='fc90fa48ae97ba6368eecb914343590bbb61b388089510d0c56c2dde52987ef3'; \
              ;; \
            'i386') \
              url='https://dl.google.com/go/go1.21.3.linux-386.tar.gz'; \
              sha256='fb209fd070db500a84291c5a95251cceeb1723e8f6142de9baca5af70a927c0e'; \
              ;; \
            'mips64el') \
              url='https://dl.google.com/go/go1.21.3.linux-mips64le.tar.gz'; \
              sha256='a569ffbc88b4e14cf2682f65cec950460665e4392b0d78b8868b4718c979bda8'; \
              ;; \
            'ppc64el') \
              url='https://dl.google.com/go/go1.21.3.linux-ppc64le.tar.gz'; \
              sha256='3b0e10a3704f164a6e85e0377728ec5fd21524fabe4c925610e34076586d5826'; \
              ;; \
            'riscv64') \
              url='https://dl.google.com/go/go1.21.3.linux-riscv64.tar.gz'; \
              sha256='67d14d3e513e505d1ec3ea34b55641c6c29556603c7899af94045c170c1c0f94'; \
              ;; \
            's390x') \
              url='https://dl.google.com/go/go1.21.3.linux-s390x.tar.gz'; \
              sha256='4c78e2e6f4c684a3d5a9bdc97202729053f44eb7be188206f0627ef3e18716b6'; \
              ;; \
            *) echo >&2 "error: unsupported architecture '$arch' (likely packaging update needed)"; exit 1 ;; \
          esac; \
          build=; \
          if [ -z "$url" ]; then \
          # https://github.com/golang/go/issues/38536#issuecomment-616897960
            build=1; \
            url='https://dl.google.com/go/go1.21.3.src.tar.gz'; \
            sha256='186f2b6f8c8b704e696821b09ab2041a5c1ee13dcbc3156a13adcf75931ee488'; \
            echo >&2; \
            echo >&2 "warning: current architecture ($arch) does not have a compatible Go binary release; will be building from source"; \
            echo >&2; \
          fi; \
          \
          wget -O go.tgz.asc "$url.asc"; \
          wget -O go.tgz "$url" --progress=dot:giga; \
          echo "$sha256 *go.tgz" | sha256sum -c -; \
          \
          # https://github.com/golang/go/issues/14739#issuecomment-324767697
          GNUPGHOME="$(mktemp -d)"; export GNUPGHOME; \
          # https://www.google.com/linuxrepositories/
          gpg --batch --keyserver keyserver.ubuntu.com --recv-keys 'EB4C 1BFD 4F04 2F6D DDCC  EC91 7721 F63B D38B 4796'; \
          # let's also fetch the specific subkey of that key explicitly that we expect "go.tgz.asc" to be signed by, just to make sure we definitely have it
          gpg --batch --keyserver keyserver.ubuntu.com --recv-keys '2F52 8D36 D67B 69ED F998  D857 78BD 6547 3CB3 BD13'; \
          gpg --batch --verify go.tgz.asc go.tgz; \
          gpgconf --kill all; \
          rm -rf "$GNUPGHOME" go.tgz.asc; \
          \
          tar -C /usr/local -xzf go.tgz; \
          rm go.tgz;
          /usr/local/go/bin/go version
          echo "/usr/local/go/bin" >> $GITHUB_PATH
          echo "${HOME}/go/bin" >> $GITHUB_PATH

      - name: Install one-off Bystro dependencies
        shell: bash
        run: |
          go install github.com/bystrogenomics/bystro-vcf@2.2.2
          cpm install -g https://github.com/bystrogenomics/msgpack-perl.git
          cpm install -g --no-test MouseX::Getopt
          git clone --depth 1 --recurse-submodules https://github.com/salortiz/LMDB_File.git \
            && cd LMDB_File \
            && cpanm --quiet .

      - name: Checkout code
        uses: actions/checkout@v4

      - name: Install Bystro dependencies
        run: |
          cd perl
          cpm install -g --show-build-log-on-failure $(dzil authordeps --missing)
          cpm install -g --show-build-log-on-failure $(dzil listdeps --missing)

      - name: Test Bystro
        run: cd perl && dzil test --all

      - name: Build Bystro tarball
        run: cd perl && dzil build