We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Dear Team,
I have the following when using threads 24 (default 16), the most recent commit:
(pangenome) bash-4.2$ ggcat build --gfa --kmer-length 61 -m 200 --output-file ../ggcat_out -t ./tmp -j 24 ./*.fna.gz Allocator initialized: mem: 200 GiB chunks: 819200 log2: 18 Using m: 14 with k: 61 Started phase: reads bucketing Temp buckets files size: 3.16 MiB Finished phase: reads bucketing. phase duration: 7.22s gtime: 7.22s Started phase: kmers merge Finished phase: kmers merge. phase duration: 18.94s gtime: 26.15s Started phase: hashes sorting Panic: panicked at /home/jiz322/.cargo/registry/src/index.crates.io-6f17d22bba15001f/parallel-processor-0.1.18/src/memory_fs/file/internal.rs:265:26: called Result::unwrap() on an Err value: "Error while opening file ./tmp/build_graph_57ad3849-d1a0-4ba7-b92d-b1439cfde206/unitigs_map.1019: Too many open files (os error 24)" Backtrace: 0: 1: 2: 3: 4: 5: 6: 7: 8: 9: 10: 11: 12: 13: 14: 15: 16: 17: 18: 19: 20: 21:
Result::unwrap()
Err
Thanks
Jianshu
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Dear Team,
I have the following when using threads 24 (default 16), the most recent commit:
(pangenome) bash-4.2$ ggcat build --gfa --kmer-length 61 -m 200 --output-file ../ggcat_out -t ./tmp -j 24 ./*.fna.gz
Allocator initialized: mem: 200 GiB chunks: 819200 log2: 18
Using m: 14 with k: 61
Started phase: reads bucketing
Temp buckets files size: 3.16 MiB
Finished phase: reads bucketing. phase duration: 7.22s gtime: 7.22s
Started phase: kmers merge
Finished phase: kmers merge. phase duration: 18.94s gtime: 26.15s
Started phase: hashes sorting
Panic: panicked at /home/jiz322/.cargo/registry/src/index.crates.io-6f17d22bba15001f/parallel-processor-0.1.18/src/memory_fs/file/internal.rs:265:26:
called
Result::unwrap()
on anErr
value: "Error while opening file ./tmp/build_graph_57ad3849-d1a0-4ba7-b92d-b1439cfde206/unitigs_map.1019: Too many open files (os error 24)"Backtrace: 0:
1:
2:
3:
4:
5:
6:
7:
8:
9:
10:
11:
12:
13:
14:
15:
16:
17:
18:
19:
20:
21:
Thanks
Jianshu
The text was updated successfully, but these errors were encountered: