setup.py

import codecs
import os.path
from setuptools import setup, find_packages

def read(rel_path):
    here = os.path.abspath(os.path.dirname(__file__))
    with codecs.open(os.path.join(here, rel_path), 'r') as fp:
        return fp.read()

def get_version(rel_path):
    for line in read(rel_path).splitlines():
        if line.startswith('__version__'):
            delim = '"' if '"' in line else "'"
            return line.split(delim)[1]
        else:
            raise RuntimeError("Unable to find version string.")

setup(
    name="PyGFF",
    version=get_version("pygff/__init__.py"),
    packages=find_packages(),
    include_package_data=True,
    install_requires=[
        "HTSeq",
        "pyfaidx"
    ],
    entry_points='''
        [console_scripts]
        gfftools=pygff.main:cli
    ''',
)