build.yml

name: Build Package

on:
  push:
    branches: '*'
  pull_request:
    branches: ['main']
  workflow_dispatch:

jobs:
  build:
    runs-on: ubuntu-20.04
    steps:
      - name: Checkout repo
        uses: actions/checkout@v1
      
      - name: Set up Python 3.6
        uses: actions/setup-python@v2
        with:
          python-version: '3.6'

      - name: Install dependencies
        run: pip install wheel setuptools
    
      - name: Build package
        run: python setup.py bdist_wheel
    
      - name: Upload Python wheel
        uses: actions/upload-artifact@v3
        with:
          name: "Python wheel"
          path: ./dist/*
          if-no-files-found: error

  tests:
    needs: build
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [windows-latest, ubuntu-latest, macos-latest]
        python: ["3.8", "3.9", "3.10", "3.11", "3.12"]
    steps:
      - name: Checkout repo
        uses: actions/checkout@v1
      
      - name: Set up Python ${{ matrix.python }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python }}
      
      - name: Install dependencies
        run: pip install wheel setuptools
    
      - name: Download artifact
        uses: actions/download-artifact@v3
        with:
          name: "Python wheel"

      - name: Install wheel
        run: pip install --find-links=. vsi2tif-*
        shell: bash

      - name: Test CLI
        run: vsi2tif --help
        shell: bash
    
  test-convert:
    needs: build
    runs-on: macos-latest
    steps:
      - name: Checkout repo
        uses: actions/checkout@v1
        
      - name: Set up Python 3.10
        uses: actions/setup-python@v2
        with:
            python-version: '3.10'
        
      - name: Download artifact
        uses: actions/download-artifact@v3
        with:
            name: "Python wheel"
        
      - name: Install wheel
        run: pip install --find-links=. vsi2tif-*
        shell: bash
      
      - name: Install vips
        run: brew install vips
      
      - name: Download bftools
        run: |
          wget http://downloads.openmicroscopy.org/latest/bio-formats5.6/artifacts/bftools.zip
          unzip bftools.zip
    
      - name: Convert WSI
        run: |
          wget https://openslide.cs.cmu.edu/download/openslide-testdata/Olympus/OS-1.zip
          unzip OS-1.zip

      - name: Test conversion
        run: vsi2tif -i ./OS-1/ -o ./output/ -b bftools/bfconvert
        shell: bash