MetaboLink is a web-based application created with shiny R and it is available at http://computproteomics.bmb.sdu.dk/Metabolomics/. Documentation on how to use the app can be found in Wiki MetaboLink.
Example files to be used with the app are included in the folder example_files.
docker pull anitamnd/metabolink
docker run -t -i -p 3838:3838 anitamnd/metabolink
and access the shiny app through http://localhost:3838
git clone https://github.com/anitamnd/MetaboLink
Use the following code to install the required R packages:
install.packages('BiocManager', repos='http://cran.us.r-project.org')
library(BiocManager)
BiocManager::install(c('dplyr','plotly','shiny','shinyBS','shinydashboard','shinycssloaders','limma','shinyjs','shinyalert','shinyWidgets','spsComps','ggplot2','ggrepel','gridExtra','impute','randomForest','writexl','stringi','igraph'), ask=F)
You can then run the app from the server.R or ui.R files using RStudio or run the app on a shiny-server.
For software issues and general questions, please submit an issue.
If you use MetaboLink, please cite:
Mendes A. et al. (2024) MetaboLink: A web application for Streamlined Processing and Analysis of Large-Scale Untargeted Metabolomics Data