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Combine together SNVs into MNVs for assemblies #71

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apetkau opened this issue Jul 24, 2021 · 0 comments
Open

Combine together SNVs into MNVs for assemblies #71

apetkau opened this issue Jul 24, 2021 · 0 comments
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variant/mutation Variant/mutation based analysis

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@apetkau
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apetkau commented Jul 24, 2021

It looks like for assembly processing, it's possible to have SNVs right next to each other (e.g., position 10, 11, and 12) show up as separate items in a VCF file. These should be combined together if I want to make sure SnpEff results are correct.
@apetkau apetkau added the variant/mutation Variant/mutation based analysis label Aug 11, 2021
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