fix typo in index.qmd #2
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| name: Render Book on PR to Main | ||
| on: | ||
| pull_request_target: | ||
| types: [closed] | ||
| branches: | ||
| - main | ||
| jobs: | ||
| check-merged: | ||
| if: github.event.pull_request.merged == true && startsWith(github.event.pull_request.head.ref, 'handbook_update') | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| ref: ${{ github.event.pull_request.head.ref }} | ||
| build-and-render: | ||
| if: github.event.pull_request.merged == true && startsWith(github.event.pull_request.head.ref, 'handbook_update') | ||
| runs-on: ubuntu-latest | ||
| needs: [check-merged] # Ensure this runs only after the check-merged job completes | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Check out repository | ||
| uses: actions/checkout@v4 | ||
| - name: Set up Quarto | ||
| uses: quarto-dev/quarto-actions/setup@v2 | ||
| with: | ||
| tinytex: false | ||
| # uncomment and specify version if needed | ||
| # version: SPECIFIC-QUARTO-VERSION-HERE | ||
| - name: Setup R | ||
| uses: r-lib/actions/setup-r@v2 | ||
| - name: Restore R package from renv | ||
| run: | | ||
| install.packages("renv") | ||
| renv::restore() | ||
| # Rscript -e ' | ||
| # if (!requireNamespace("pacman", quietly = TRUE)) install.packages("pacman") | ||
| # pacman::p_load( | ||
| # "tidyverse", "googlesheets4", "learnr", "swirl", "here", "rio", "openxlsx", | ||
| # "pacman", "renv", "remotes", "linelist", "naniar", "janitor", "gtsummary", | ||
| # "rstatix", "broom", "lmtest", "easystats", "epicontacts", "EpiNow2", | ||
| # "EpiEstim", "projections", "incidence2", "i2extras", "epitrix", "distcrete", | ||
| # "cowplot", "RColorBrewer", "ggnewscale", "DiagrammeR", "gghighlight", "ggrepel", | ||
| # "plotly", "gganimate", "sf", "tmap", "OpenStreetMap", "spdep", "rmarkdown", | ||
| # "reportfactory", "officer", "flexdashboard", "shiny", "knitr", "flextable", | ||
| # "ggtree", "ape", "treeio", "babelquarto", "babeldown")' | ||
| - name: Render Book | ||
| run: Rscript -e 'source("quarto_runfile.R")' | ||
| - name: Publish to Netlify (and render) | ||
| uses: quarto-dev/quarto-actions/publish@v2 | ||
| with: | ||
| target: netlify | ||
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} | ||
