Final edits up to GIS

html_outputs/index.html

@@ -794,11 +794,11 @@ <h2 class="unnumbered anchored" data-anchor-id="r-for-applied-epidemiology-and-p
 <ul>
 <li>Visit our <a href="http://www.appliedepi.org"><strong>website</strong></a> and <a href="https://forms.gle/9awNd8syypTSYUsn7"><strong>join our contact list</strong></a><br>
 </li>
-<li><strong>[email protected]</strong>, tweet <a href="https://twitter.com/appliedepi"><strong>@appliedepi</strong></a>, or <a href="www.linkedin.com/company/appliedepi"><strong>LinkedIn</strong></a><br>
+<li><strong>[email protected]</strong>, tweet <a href="https://twitter.com/appliedepi"><strong>@appliedepi</strong></a>, or <a href="https://www.linkedin.com/company/appliedepi"><strong>LinkedIn</strong></a><br>
 </li>
 <li>Submit issues to our <a href="https://github.com/appliedepi/epiRhandbook_eng"><strong>Github repository</strong></a></li>
 </ul>
-<p><strong>We offer live R training</strong> from instructors with decades of applied epidemiology experience - <a href="www.appliedepi.org/live">www.appliedepi.org/live</a>.</p>
+<p><strong>We offer live R training</strong> from instructors with decades of applied epidemiology experience - <a href="https://appliedepi.org/live/">www.appliedepi.org/live</a>.</p>
 </div>
 </div>
 <form target="_blank" action="https://www.paypal.com/donate" method="post">
@@ -1463,7 +1463,7 @@ <h3 class="unnumbered anchored" data-anchor-id="contribution">Contribution</h3>
     </div>
   </div>
 </footer>
-<script>var lightboxQuarto = GLightbox({"descPosition":"bottom","selector":".lightbox","loop":false,"closeEffect":"zoom","openEffect":"zoom"});
+<script>var lightboxQuarto = GLightbox({"loop":false,"openEffect":"zoom","selector":".lightbox","closeEffect":"zoom","descPosition":"bottom"});
 (function() {
   let previousOnload = window.onload;
   window.onload = () => {

html_outputs/new_pages/data_used.html

@@ -652,6 +652,12 @@
   <a href="../new_pages/shiny_basics.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">43</span>&nbsp; <span class="chapter-title">Dashboards with Shiny</span></span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../new_pages/quarto.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">44</span>&nbsp; <span class="chapter-title">Quarto</span></span></a>
+  </div>
 </li>
       </ul>
   </li>
@@ -667,43 +673,43 @@
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../new_pages/writing_functions.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">44</span>&nbsp; <span class="chapter-title">Writing functions</span></span></a>
+ <span class="menu-text"><span class="chapter-number">45</span>&nbsp; <span class="chapter-title">Writing functions</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../new_pages/directories.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">45</span>&nbsp; <span class="chapter-title">Directory interactions</span></span></a>
+ <span class="menu-text"><span class="chapter-number">46</span>&nbsp; <span class="chapter-title">Directory interactions</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../new_pages/collaboration.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">46</span>&nbsp; <span class="chapter-title">Version control and collaboration with Git and Github</span></span></a>
+ <span class="menu-text"><span class="chapter-number">47</span>&nbsp; <span class="chapter-title">Version control and collaboration with Git and Github</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../new_pages/errors.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">47</span>&nbsp; <span class="chapter-title">Common errors</span></span></a>
+ <span class="menu-text"><span class="chapter-number">48</span>&nbsp; <span class="chapter-title">Common errors</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../new_pages/help.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">48</span>&nbsp; <span class="chapter-title">Getting help</span></span></a>
+ <span class="menu-text"><span class="chapter-number">49</span>&nbsp; <span class="chapter-title">Getting help</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../new_pages/network_drives.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">49</span>&nbsp; <span class="chapter-title">R on network drives</span></span></a>
+ <span class="menu-text"><span class="chapter-number">50</span>&nbsp; <span class="chapter-title">R on network drives</span></span></a>
   </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../new_pages/data_table.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text"><span class="chapter-number">50</span>&nbsp; <span class="chapter-title">Data Table</span></span></a>
+ <span class="menu-text"><span class="chapter-number">51</span>&nbsp; <span class="chapter-title">Data Table</span></span></a>
   </div>
 </li>
       </ul>
@@ -883,7 +889,7 @@ <h4 class="unnumbered anchored" data-anchor-id="contact-tracing">Contact Tracing
 <p><a href="https://github.com/WorldHealthOrganization/godata/blob/master/analytics/r-reporting/data/followups_clean.rds?raw=true" class="download-button"> Click to download <span>the contact follow-up data (.rds file)</span> </a></p>
 <p><a href="https://github.com/appliedepi/epiRhandbook_eng/blob/master/data/contact_tracing.rds?raw=true" class="download-button"> Click to download <span>the contact follow-up data (.rds file)</span> </a></p>
 <p><span style="color: black;"><strong><em>NOTE:</em></strong> Structured contact tracing data from other software (e.g.&nbsp;KoBo, DHIS2 Tracker, CommCare) may look different. If you would like to contribute alternative sample data or content for this page, please <a href="https://epirhandbook.com/#r-for-applied-epidemiology-and-public-health">contact us</a>.</span></p>
-<p><span style="color: darkgreen;"><strong><em>TIP:</em></strong> If you are deploying Go.Data and want to connect to your instance’s API, see the Import and export page <a href="#import_api">(API section)</a> and the <a href="https://worldhealthorganization.github.io/godata/">Go.Data Community of Practice</a>.</span></p>
+<p><span style="color: darkgreen;"><strong><em>TIP:</em></strong> If you are deploying Go.Data and want to connect to your instance’s API, see the Import and export page <a href="importing.html#import_api">(API section)</a> and the <a href="https://worldhealthorganization.github.io/godata/">Go.Data Community of Practice</a>.</span></p>
 </section>
 <section id="gis" class="level4 unnumbered">
 <h4 class="unnumbered anchored" data-anchor-id="gis">GIS</h4>
@@ -1578,7 +1584,7 @@ <h4 class="unnumbered anchored" data-anchor-id="data_shiny">Shiny</h4>
     </div>
   </div>
 </footer>
-<script>var lightboxQuarto = GLightbox({"selector":".lightbox","loop":false,"closeEffect":"zoom","openEffect":"zoom","descPosition":"bottom"});
+<script>var lightboxQuarto = GLightbox({"loop":false,"openEffect":"zoom","selector":".lightbox","descPosition":"bottom","closeEffect":"zoom"});
 (function() {
   let previousOnload = window.onload;
   window.onload = () => {