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Fix CI issues

Fix CI issues #212

Workflow file for this run

# https://docs.github.com/en/actions
# https://github.com/codecov/example-python
# https://stackoverflow.com/a/3237883
# https://stackoverflow.com/a/5688592
# https://stackoverflow.com/a/6270803
# https://github.com/actions/virtual-environments/issues/1341
name: CI
on:
schedule:
- cron: '37 3 * * 0'
push:
branches: '**'
pull_request:
branches: '**'
jobs:
lint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
- name: Install Black
run: |
pip install black
- name: Lint with Black
run: |
black --check --diff .
build-docs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
- name: Install Sphinx
run: |
pip install -r docs/requirements.txt
pip install .
- name: Build docs with Sphinx
run: |
sphinx-build -W --keep-going -T -E -D language=en docs docs/_build
test:
needs: [lint, build-docs]
runs-on: ${{ matrix.os }}
strategy:
matrix:
include:
- os: ubuntu-latest
python-version: '3.7'
job_id: 0
- os: ubuntu-latest
python-version: '3.8'
job_id: 1
- os: ubuntu-latest
python-version: '3.9'
job_id: 2
- os: ubuntu-latest
python-version: '3.10'
job_id: 3
- os: macos-latest
python-version: '3.10'
job_id: 4
- os: windows-latest
python-version: '3.10'
job_id: 5
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0
persist-credentials: false
- name: Setup Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Determine if downloads are enabled for this job
# for testing, limit downloads from the resource servers to only the selected job for
# PRs and the master branch; note that the master branch is tested weekly via `cron`,
# so this ensures all Python versions will be periodically integration tested with the
# resource servers
env:
NUM_JOBS: 6
JOB_ID: ${{ matrix.job_id }}
if: ${{ github.event_name == 'pull_request' || github.ref == 'refs/heads/master' }}
shell: bash
run: |
SELECTED_JOB=$((10#$(date +%V) % $NUM_JOBS))
if [[ $SELECTED_JOB == $JOB_ID ]]; then
# set environment variable to download resources for selected job
echo "DOWNLOADS_ENABLED=true" >> $GITHUB_ENV
fi
- name: Install dependencies
run: |
pip install pytest-cov
pip install .
- name: Ensure Python and source code are on same drive (Windows)
if: ${{ matrix.os == 'windows-latest' }}
shell: cmd
run: |
mkdir C:\a
xcopy D:\a C:\a /s /e
- name: Test with pytest (Ubuntu & macOS)
if: ${{ matrix.os != 'windows-latest' }}
run: |
pytest --cov=lineage tests
- name: Test with pytest (Windows)
if: ${{ matrix.os == 'windows-latest' }}
working-directory: C:\a\lineage\lineage
run: |
pytest --cov=lineage tests
- name: Upload coverage to Codecov (Ubuntu & macOS)
if: ${{ matrix.os != 'windows-latest' }}
uses: codecov/codecov-action@v3