From 20e571e8e0ed3d7784695987120c07f301637c1f Mon Sep 17 00:00:00 2001 From: Finlay Maguire Date: Fri, 24 Sep 2021 12:28:55 -0400 Subject: [PATCH] Fix bioconda channel order Should be: - conda-forge - bioconda - defaults and the --channel command with conda prioritises from left to right highest:lowest Currently the install instructions had bioconda as top priority instead of conda-forge so I've fixed this. This was almost certainly my fault in the first place! --- README.rst | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.rst b/README.rst index 845887a..f0f6b41 100644 --- a/README.rst +++ b/README.rst @@ -113,25 +113,25 @@ Search for RGI package and show available versions: .. code-block:: sh - $ conda search --channel bioconda --channel conda-forge --channel defaults rgi + $ conda search --channel conda-forge --channel bioconda --channel defaults rgi Create a new conda environment .. code-block:: sh - $ conda create --name rgi --channel bioconda --channel conda-forge --channel defaults rgi + $ conda create --name rgi --channel conda-forge --channel bioconda --channel defaults rgi Install RGI package: .. code-block:: sh - $ conda install --channel bioconda --channel conda-forge --channel defaults rgi + $ conda install --channel conda-forge --channel bioconda --channel defaults rgi Install RGI specific version: .. code-block:: sh - $ conda install --channel bioconda --channel conda-forge --channel defaults rgi=5.1.1 + $ conda install --channel conda-forge --channel bioconda --channel defaults rgi=5.1.1 Remove RGI package: