From d769670678ee46deff6d31dfb9d8d01f2b0d4ccf Mon Sep 17 00:00:00 2001
From: Biowilko <sam1.wilkinson1@gmail.com>
Date: Thu, 26 Sep 2024 15:00:25 +0100
Subject: [PATCH] Small changes to mermaid plot

---
 README.md | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 4baf096..e7f22bb 100644
--- a/README.md
+++ b/README.md
@@ -10,7 +10,7 @@ flowchart TD
   ref[reference.fasta]
   primers[primer.bed]
   fastq[directory]
-  human-t2t-hla[humanT2Treference]
+  humanT2Treference[humanT2Treference]
   fastq --> performHostFilter
   humanT2Treference --> performHostFilter
   performHostFilter(performHostFilter) --> readMapping(readMapping)
@@ -27,7 +27,6 @@ flowchart TD
   callConsensusFreebayes --> Squirrel(Squirrel)
   ref --> makeQCCSV
   primers --> makeQCCSV
-  primer_pairs --> makeQCCSV
   makeQCCSV --> qcCSV(qc.csv)
   makeQCCSV --> depthPNG(depth.png)
   Squirrel --> SquirrelReport(squirrel-report.html)