From 40d3b01960b71399098fec73204a4e17b8cb70c3 Mon Sep 17 00:00:00 2001
From: Biowilko <sam1.wilkinson1@gmail.com>
Date: Thu, 22 Aug 2024 14:47:23 +0100
Subject: [PATCH] Add min / max length for itm scheme

---
 main.nf         | 8 ++++----
 nextflow.config | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/main.nf b/main.nf
index 8fa034d..c612ff6 100644
--- a/main.nf
+++ b/main.nf
@@ -372,10 +372,10 @@ workflow {
 
       if (!params.min_len) {
           params.remove('min_len')
-          if (params.scheme_version.startsWith("yale-mpox")) {
+          if (params.scheme_version.startsWith("yale-mpox") || params.scheme_version.startsWith("itm-mpox")) {
               params._min_len = 1500
           } else {
-              params._min_len = 400
+              params._min_len = 1500
           }
       } else {
           params._min_len = params.min_len
@@ -383,10 +383,10 @@ workflow {
       }
       if (!params.max_len) {
           params.remove('max_len')
-          if (params.scheme_version.startsWith("yale-mpox")){
+          if (params.scheme_version.startsWith("yale-mpox") || params.scheme_version.startsWith("itm-mpox")) {
               params._max_len = 3000
           } else {
-              params._max_len = 700
+                params._max_len = 2500
           }
       } else {
           params._max_len = params.max_len
diff --git a/nextflow.config b/nextflow.config
index 9cd880f..d5430fa 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -58,7 +58,7 @@ manifest {
     description     = 'Run the ARTIC SARS-CoV-2 methodology on multiplexed MinION, GridION, and PromethION data.'
     mainScript      = 'main.nf'
     nextflowVersion = '>=23.04.2'
-    version         = 'v1.0.5'
+    version         = 'v1.0.6'
 }
 
 epi2melabs {