This article presupposes that you have installed RAMPART.
Start MinKNOW
Create experiment name
Select Output Location
Start run
Open terminal window
cd to `<output_location>/<experiment_name>'
create run_configuration.json
edit it to map barcodes to sample names
ensure basecalledPath is pointing to the location of the basecalled FASTQ files
Run RAMPART:
rampart --protocol ~/artic-ebov/rampart/PanEBOV