diff --git a/dockerfiles/kraken2-server/environment.yml b/dockerfiles/kraken2-server/environment.yml index ade0536..9c388c4 100644 --- a/dockerfiles/kraken2-server/environment.yml +++ b/dockerfiles/kraken2-server/environment.yml @@ -3,6 +3,6 @@ channels: - bioconda - conda-forge - defaults - - epi2melabs + - nanoporetech dependencies: - - kraken2-server # not on mac \ No newline at end of file + - kraken2-server>=0.1.8 # not on mac \ No newline at end of file diff --git a/dockerfiles/scylla/environment.yml b/dockerfiles/scylla/environment.yml index 9cec028..13c2aea 100644 --- a/dockerfiles/scylla/environment.yml +++ b/dockerfiles/scylla/environment.yml @@ -9,7 +9,7 @@ dependencies: - pysam - pip - kraken2 - - kraken2-server # not on mac + - kraken2-server>=0.1.8 # not on mac - fastcat - taxonkit - fastp diff --git a/modules/kraken_client.nf b/modules/kraken_client.nf index dd3295d..7a7ab7e 100644 --- a/modules/kraken_client.nf +++ b/modules/kraken_client.nf @@ -7,7 +7,7 @@ process kraken2_client { label "error_retry" maxForks kraken_compute - conda "nanoporetech::kraken2-server=0.1.7" + conda "nanoporetech::kraken2-server=0.1.8" container "${params.wf.container}:${params.wf.container_version}" containerOptions {workflow.profile != "singularity" ? "--network host" : ""} diff --git a/modules/kraken_server.nf b/modules/kraken_server.nf index 20b3022..1c09ff4 100644 --- a/modules/kraken_server.nf +++ b/modules/kraken_server.nf @@ -92,7 +92,7 @@ process kraken_server { process stop_kraken_server { label "process_single" - conda "nanoporetech::kraken2-server=0.1.7" + conda "nanoporetech::kraken2-server=0.1.8" container "${params.wf.container}:${params.wf.container_version}" containerOptions {workflow.profile != "singularity" ? "--network host" : ""} // this shouldn't happen, but we'll keep retrying diff --git a/nextflow.config b/nextflow.config index afcf6a0..b71cc5c 100644 --- a/nextflow.config +++ b/nextflow.config @@ -32,7 +32,7 @@ manifest { description = 'Classify metagenomic sequence data from human respiratory infections.' mainScript = 'main.nf' nextflowVersion = '>=20.10.0' - version = 'v1.0.0' + version = 'v1.1.2' } profiles {