diff --git a/main.nf b/main.nf index 304c41d..0dba77c 100644 --- a/main.nf +++ b/main.nf @@ -41,7 +41,7 @@ process squirrel { if ( params.include_background ) extra += " --include-background" if ( params.additional_background ) - extra += " --additional-background bg.fa" + extra += " -bf bg.fa" if ( params.outgroups ) extra += " --outgroups ${params.outgroups}"