check-standard.yaml

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
  push:
    branches:
      - '**'
  pull_request:
    branches:
      - master
  schedule:
    - cron: "0 0 1 * ?"

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: windows-latest, r: 'release'}
          - {os: macOS-latest, r: 'release'}
          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
          - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
      - uses: actions/checkout@v2
        # https://community.codecov.io/t/stuck-in-processing-and-unable-to-find-report-content-in-the-storage-archive/2534
        with:
          fetch-depth: 2

      - uses: r-lib/actions/setup-r@v1
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-pandoc@v1

      - uses: r-lib/actions/setup-tinytex@v1

      - name: Set up tex in OSX
        if: runner.os == 'macOS'
        run: tlmgr install placeins cleveref

      - name: Query dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Restore R package cache
        if: runner.os != 'Windows'
        uses: actions/cache@v2
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')

      - name: Install dependencies
        run: |
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("rcmdcheck")
          tinytex:::install_yihui_pkgs()
        shell: Rscript {0}

      # Otherwise building the vignette on Windows fails
      - name: Preinstall release version of package
        if: runner.os == 'Windows'
        run: |
          remotes::install_cran("dtwclust")
        shell: Rscript {0}

      - name: Check
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
        run: |
          options(crayon.enabled = TRUE)
          rcmdcheck::rcmdcheck(build_args = "--compact-vignettes", args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check")
        shell: Rscript {0}
        continue-on-error: ${{ matrix.config.r == 'devel' }}

      - name: Test coverage
        if: runner.os == 'Linux' && matrix.config.r == 'release'
        run: |
          Rscript -e 'remotes::install_cran("covr")'
          Rscript codecov.R
        continue-on-error: true

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@v2
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: |
            check