Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

OpenFold Docker container build failing #34

Open
TejasGhanekarBayer opened this issue Nov 6, 2024 · 0 comments
Open

OpenFold Docker container build failing #34

TejasGhanekarBayer opened this issue Nov 6, 2024 · 0 comments

Comments

@TejasGhanekarBayer
Copy link

Hello!

I was trying to do a fresh infrastructure deployment into a new account and found out that the CodeBuildOpenFold project is failing with the following error.

failed
--
4002 | Pip subprocess error:
4003 | Running command git clone --filter=blob:none --quiet https://github.com/NVIDIA/dllogger.git /tmp/pip-req-build-c342bheb
4004 | WARNING: Ignoring version 1.5.10 of pytorch_lightning since it has invalid metadata:
4005 | Requested pytorch_lightning==1.5.10 from https://files.pythonhosted.org/packages/18/f1/f59b307f75db1886c96e396eec878501510677394868680b8d2b8b58c47c/pytorch_lightning-1.5.10-py3-none-any.whl (from -r /opt/openfold/condaenv.y87mu00n.requirements.txt (line 11)) has invalid metadata: .* suffix can only be used with `==` or `!=` operators
4006 | torch (>=1.7.*)
4007 | ~~~~~~^
4008 | Please use pip<24.1 if you need to use this version.
4009 | ERROR: Ignored the following versions that require a different python version: 1.14.0 Requires-Python >=3.10; 1.14.0rc1 Requires-Python >=3.10; 1.14.0rc2 Requires-Python >=3.10
4010 | ERROR: Could not find a version that satisfies the requirement pytorch_lightning==1.5.10 (from versions: 0.0.2, 0.2, 0.2.2, 0.2.3, 0.2.4, 0.2.4.1, 0.2.5, 0.2.5.1, 0.2.5.2, 0.2.6, 0.3, 0.3.1, 0.3.2, 0.3.3, 0.3.4, 0.3.4.1, 0.3.5, 0.3.6, 0.3.6.1, 0.3.6.3, 0.3.6.4, 0.3.6.5, 0.3.6.6, 0.3.6.7, 0.3.6.8, 0.3.6.9, 0.4.0, 0.4.1, 0.4.2, 0.4.3, 0.4.4, 0.4.5, 0.4.6, 0.4.7, 0.4.8, 0.4.9, 0.5.0, 0.5.1, 0.5.1.2, 0.5.1.3, 0.5.2, 0.5.2.1, 0.5.3, 0.5.3.1, 0.5.3.2, 0.5.3.3, 0.6.0, 0.7.1, 0.7.3, 0.7.5, 0.7.6, 0.8.1, 0.8.3, 0.8.4, 0.8.5, 0.9.0, 0.10.0, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.0.6, 1.0.7, 1.0.8, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.1.5, 1.1.6, 1.1.7, 1.1.8, 1.2.0rc0, 1.2.0rc1, 1.2.0rc2, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.2.4, 1.2.5, 1.2.6, 1.2.7, 1.2.8, 1.2.9, 1.2.10, 1.3.0rc1, 1.3.0rc2, 1.3.0rc3, 1.3.0, 1.3.1, 1.3.2, 1.3.3, 1.3.4, 1.3.5, 1.3.6, 1.3.7, 1.3.7.post0, 1.3.8, 1.4.0rc0, 1.4.0rc1, 1.4.0rc2, 1.4.0, 1.4.1, 1.4.2, 1.4.3, 1.4.4, 1.4.5, 1.4.6, 1.4.7, 1.4.8, 1.4.9, 1.5.0rc0, 1.5.0rc1, 1.5.0, 1.5.1, 1.5.2, 1.5.3, 1.5.4, 1.5.5, 1.5.6, 1.5.7, 1.5.8, 1.5.9, 1.5.10, 1.6.0rc0, 1.6.0rc1, 1.6.0, 1.6.1, 1.6.2, 1.6.3, 1.6.4, 1.6.5, 1.7.0rc0, 1.7.0rc1, 1.7.0, 1.7.1, 1.7.2, 1.7.3, 1.7.4, 1.7.5, 1.7.6, 1.7.7, 1.8.0rc0, 1.8.0rc1, 1.8.0rc2, 1.8.0, 1.8.0.post1, 1.8.1, 1.8.2, 1.8.3, 1.8.3.post0, 1.8.3.post1, 1.8.3.post2, 1.8.4, 1.8.4.post0, 1.8.5, 1.8.5.post0, 1.8.6, 1.9.0rc0, 1.9.0, 1.9.1, 1.9.2, 1.9.3, 1.9.4, 1.9.5, 2.0.0rc0, 2.0.0, 2.0.1, 2.0.1.post0, 2.0.2, 2.0.3, 2.0.4, 2.0.5, 2.0.6, 2.0.7, 2.0.8, 2.0.9, 2.0.9.post0, 2.1.0rc0, 2.1.0rc1, 2.1.0, 2.1.1, 2.1.2, 2.1.3, 2.1.4, 2.2.0rc0, 2.2.0, 2.2.0.post0, 2.2.1, 2.2.2, 2.2.3, 2.2.4, 2.2.5, 2.3.0, 2.3.1, 2.3.2, 2.3.3)
4011 | ERROR: No matching distribution found for pytorch_lightning==1.5.10
4012 |  
4013 |  
4014 | CondaEnvException: Pip failed
4015 |  
4016 | The command '/bin/sh -c conda env update -n base --file /opt/openfold/environment.yml   && conda clean --all --force-pkgs-dirs --yes' returned a non-zero code: 1
4017 |  
4018 | [Container] 2024/07/31 09:09:08.354497 Command did not exit successfully docker build --build-arg AWS_DEFAULT_REGION=$AWS_DEFAULT_REGION -t $IMAGE_REPO_NAME:$IMAGE_TAG $BUILD_CONTEXT exit status 1
4019 | [Container] 2024/07/31 09:09:08.369316 Phase complete: BUILD State: FAILED
4020 | [Container] 2024/07/31 09:09:08.369340 Phase context status code: COMMAND_EXECUTION_ERROR Message: Error while executing command: docker build --build-arg AWS_DEFAULT_REGION=$AWS_DEFAULT_REGION -t $IMAGE_REPO_NAME:$IMAGE_TAG $BUILD_CONTEXT. Reason: exit status 1

I checked a past deployment from 3 months ago and noticed that it has failed with the same error.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant