From e14befe9a848083d3edcfeb4e453baa497e4d2cc Mon Sep 17 00:00:00 2001 From: Yinuo Jin Date: Wed, 22 Nov 2023 15:04:19 +0800 Subject: [PATCH 1/2] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index ef146cb..c6fc573 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ [![Licence: GPL v3](https://img.shields.io/github/license/azizilab/starfysh)](https://github.com/azizilab/starfysh/blob/master/LICENSE) [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/152y-RpmRTEUJ16c_kF3KRwSRjm_THupv?authuser=1) -## Starfysh: Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology +## Starfysh: Spatial Transcriptomic Analysis using Reference-Free deep generative modeling with archetYpes and Shared Histology Starfysh is an end-to-end toolbox for the analysis and integration of Spatial Transcriptomic (ST) datasets. In summary, the Starfysh framework enables reference-free deconvolution of cell types and cell states and can be improved with the integration of paired histology images of tissues, if available. Starfysh is capable of integrating data from multiple tissues. In particular, Starfysh identifies common or sample-specific spatial “hubs” with unique composition of cell types. To uncover mechanisms underlying local and long-range communication, Starfysh can be used to perform downstream analysis on the spatial organization of hubs. From 513e2791a6ef92aa24933f1b7b2e82cf2837f7a3 Mon Sep 17 00:00:00 2001 From: Yinuo Jin Date: Wed, 22 Nov 2023 15:10:45 +0800 Subject: [PATCH 2/2] Update README.md --- README.md | 1 - 1 file changed, 1 deletion(-) diff --git a/README.md b/README.md index c6fc573..e2764de 100644 --- a/README.md +++ b/README.md @@ -67,7 +67,6 @@ pip install Starfysh . ├── data: Spatial Transcritomics & synthetic simulation datasets ├── notebooks: Sample tutorial notebooks -├── simulation: Synthetic simulation from scRNA-seq for benchmark ├── starfysh: Starfysh core model ```