From 1d28c1b2cc052644998ee8b77ceb9e97fc515517 Mon Sep 17 00:00:00 2001
From: Sam Horsfield <57448593+samhorsfield96@users.noreply.github.com>
Date: Mon, 27 Nov 2023 10:39:19 +0000
Subject: [PATCH 1/2] Update assign.py

Corrects name of reference network file.
---
 PopPUNK/assign.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/PopPUNK/assign.py b/PopPUNK/assign.py
index dd4642a0..be1b848d 100644
--- a/PopPUNK/assign.py
+++ b/PopPUNK/assign.py
@@ -753,7 +753,7 @@ def assign_query_hdf5(dbFuncs,
                     postpruning_combined_seq, newDistMat = \
                         prune_distance_matrix(combined_seq, names_to_remove, complete_distMat,
                                               output + "/" + os.path.basename(output) + dists_suffix)
-                    graph_suffix = file_extension_string + '_refs_graph'
+                    graph_suffix = file_extension_string + '.refs_graph'
                     save_network(genomeNetwork,
                                     prefix = output,
                                     suffix = graph_suffix,

From a36d784ff022ddf5848445e2bfff453486566c8e Mon Sep 17 00:00:00 2001
From: Sam Horsfield <57448593+samhorsfield96@users.noreply.github.com>
Date: Mon, 27 Nov 2023 11:24:26 +0000
Subject: [PATCH 2/2] Update __init__.py

Update to version 2.6.2
---
 PopPUNK/__init__.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/PopPUNK/__init__.py b/PopPUNK/__init__.py
index 10c6a5ef..7886b205 100644
--- a/PopPUNK/__init__.py
+++ b/PopPUNK/__init__.py
@@ -3,7 +3,7 @@
 
 '''PopPUNK (POPulation Partitioning Using Nucleotide Kmers)'''
 
-__version__ = '2.6.1'
+__version__ = '2.6.2'
 
 # Minimum sketchlib version
 SKETCHLIB_MAJOR = 2