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Hi!
I need to compare two protein sequences. NCBI's blastp has the comparison results, but Diamond can never find the results. Is it that my parameters are set incorrectly?
The two sequences that need to be compared are as follows (the two sequences are only 83 and 42 in length, respectively):
Hi!
I need to compare two protein sequences. NCBI's blastp has the comparison results, but Diamond can never find the results. Is it that my parameters are set incorrectly?
The two sequences that need to be compared are as follows (the two sequences are only 83 and 42 in length, respectively):
The NCBI blastp result is as follows:
The command I used is as follows:
diamond blastp --db ./diamond/db -q ./query.txt --out ./diamond/result --outfmt 6 stitle qseqid sseqid pident length mismatch gapopen qstart qend sstart send sseq_gapped qseq_gapped evalue bitscore --threads 120 --masking 0 --ultra-sensitive --id 20 -e 1e-2
Thank you very much for your reply!
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