diff --git a/.Rbuildignore b/.Rbuildignore index a32857cf..543373fa 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -9,4 +9,5 @@ ^CODE_OF_CONDUCT.md$ ^CONTRIBUTING.md$ ^docs$ -^build.R$ \ No newline at end of file +^build.R$ +^cran-comments\.md$ diff --git a/DESCRIPTION b/DESCRIPTION index ecec6d58..3e99e105 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: ssdtools -Version: 0.0.1.9003 +Version: 0.0.2 Date: 2018-10-04 Title: Species Sensitivity Distributions Description: Fits and plots species sensitivity distributions using diff --git a/NEWS.md b/NEWS.md index 6cff4c9f..170d2f6d 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,8 @@ +# ssdtools 0.0.2 + +* Added contributors +* Added hex + # ssdtools 0.0.1 * Initial Release diff --git a/R/hc.R b/R/hc.R index 9fa6d8ff..39a94782 100644 --- a/R/hc.R +++ b/R/hc.R @@ -39,7 +39,9 @@ ssd_hc.fitdist <- function(x, hc = 5L, nboot = 1001, level = 0.95, ...) { #' @describeIn ssd_hc Hazard Concentration #' @export #' @examples +#' \dontrun{ #' ssd_hc(fluazinam_lnorm) +#' } ssd_hc.fitdistcens <- function(x, hc = 5L, nboot = 1001, level = 0.95, ...) { check_vector(hc, c(1L,99L), length = 1) predict(x, percent = hc, nboot = nboot, level = level) diff --git a/R/predict.R b/R/predict.R index abb85b1c..c87ede38 100644 --- a/R/predict.R +++ b/R/predict.R @@ -51,7 +51,9 @@ predict.fitdist <- function(object, percent = 1:99, #' @inheritParams predict.fitdists #' @export #' @examples +#' \dontrun{ #' predict(fluazinam_lnorm, percent = c(5L, 50L)) +#' } predict.fitdistcens <- function(object, percent = 1:99, nboot = 1001, level = 0.95, ...) { check_vector(percent, c(1L, 99L), length = c(1, Inf), diff --git a/README.md b/README.md index 4021f240..d1bfa578 100644 --- a/README.md +++ b/README.md @@ -111,7 +111,7 @@ ssd_hc(boron_dists) #> # A tibble: 1 x 5 #> percent est se lcl ucl #> -#> 1 5 1.25 0.747 0.603 3.18 +#> 1 5 1.25 0.717 0.619 3.13 ``` Model-averaged predictions complete with confidence intervals can be @@ -154,7 +154,7 @@ See the `data-raw` folder for more information. To cite package 'ssdtools' in publications use: Joe Thorley and Carl Schwarz (2018). ssdtools: Species - Sensitivity Distributions. R package version 0.0.1.9002. + Sensitivity Distributions. R package version 0.0.1.9003. https://github.com/bcgov/ssdca A BibTeX entry for LaTeX users is @@ -163,7 +163,7 @@ A BibTeX entry for LaTeX users is title = {ssdtools: Species Sensitivity Distributions}, author = {Joe Thorley and Carl Schwarz}, year = {2018}, - note = {R package version 0.0.1.9002}, + note = {R package version 0.0.1.9003}, url = {https://github.com/bcgov/ssdca}, } ``` diff --git a/cran-comments.md b/cran-comments.md new file mode 100644 index 00000000..dd4ac912 --- /dev/null +++ b/cran-comments.md @@ -0,0 +1,15 @@ +## Test environments + +* local OS X install, R 3.5.1 +* ubuntu 12.04 (on travis-ci), R 3.5.1 +* win-builder (devel and release) + +## R CMD check results + +0 errors | 0 warnings | 1 note + +* This is a new release. + +## Reverse dependencies + +This is a new release, so there are no reverse dependencies. diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html index 2e10c12f..72d31c75 100644 --- a/docs/CODE_OF_CONDUCT.html +++ b/docs/CODE_OF_CONDUCT.html @@ -61,7 +61,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html index 66d0c36c..25fdbb7d 100644 --- a/docs/CONTRIBUTING.html +++ b/docs/CONTRIBUTING.html @@ -61,7 +61,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index fff4be35..5fa85d49 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -61,7 +61,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/articles/index.html b/docs/articles/index.html index faced5bb..d4bdcd09 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -61,7 +61,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/articles/ssdca.html b/docs/articles/ssdca.html index e3dda7b0..a585ef23 100644 --- a/docs/articles/ssdca.html +++ b/docs/articles/ssdca.html @@ -30,7 +30,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 @@ -175,7 +175,7 @@

#> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #> 1 lnorm 0.507 0.107 0.0703 239. 240. 242. 1.42 0.133 #> 2 llog 0.487 0.0993 0.0595 241. 241. 244. 3.40 0.049 -#> 3 gompertz 0.602 0.120 0.0822 238. 238. 240. 0 0.271 +#> 3 gompertz 0.602 0.120 0.0823 238. 238. 240. 0 0.271 #> 4 lgumbel 0.829 0.158 0.134 244. 245. 247. 6.58 0.01 #> 5 gamma 0.441 0.117 0.0555 238. 238. 240. 0.019 0.268 #> 6 weibull 0.435 0.117 0.0543 238. 238. 240. 0.014 0.269 @@ -201,25 +201,25 @@

#> # A tibble: 1 x 5 #> percent est se lcl ucl #> <int> <dbl> <dbl> <dbl> <dbl> -#> 1 5 1.25 0.718 0.596 3.14 +#> 1 5 1.25 0.746 0.623 3.31

By default model averaging is based on the Akaike’s Weights corrected for small sample size. To return the individual \(HC_5\) estimates and their respective Akaike’s Weights set average = FALSE

+#> 1 lnorm 5 1.68 0.720 0.909 3.63 0.133 +#> 2 llog 5 1.56 0.743 0.694 3.67 0.049 +#> 3 gompertz 5 1.30 0.464 0.989 2.82 0.271 +#> 4 lgumbel 5 1.77 0.498 1.13 3.03 0.01 +#> 5 gamma 5 1.08 0.851 0.325 3.44 0.268 +#> 6 weibull 5 1.09 0.731 0.380 3.20 0.269

For interpretation of the values see Schwarz and Tillmanns (in prep.).

To get the \(HC_50\) estimates use

+#> 1 5 1.25 0.740 0.606 3.26

diff --git a/docs/articles/ssdca_files/figure-html/unnamed-chunk-1-1.png b/docs/articles/ssdca_files/figure-html/unnamed-chunk-1-1.png index ff44294f..1ce2d297 100644 Binary files a/docs/articles/ssdca_files/figure-html/unnamed-chunk-1-1.png and b/docs/articles/ssdca_files/figure-html/unnamed-chunk-1-1.png differ diff --git a/docs/articles/ssdca_files/figure-html/unnamed-chunk-6-1.png b/docs/articles/ssdca_files/figure-html/unnamed-chunk-6-1.png index 93e7a7f2..53ebb09a 100644 Binary files a/docs/articles/ssdca_files/figure-html/unnamed-chunk-6-1.png and b/docs/articles/ssdca_files/figure-html/unnamed-chunk-6-1.png differ diff --git a/docs/articles/ssdca_files/figure-html/unnamed-chunk-7-1.png b/docs/articles/ssdca_files/figure-html/unnamed-chunk-7-1.png index fb582742..088c707f 100644 Binary files a/docs/articles/ssdca_files/figure-html/unnamed-chunk-7-1.png and b/docs/articles/ssdca_files/figure-html/unnamed-chunk-7-1.png differ diff --git a/docs/authors.html b/docs/authors.html index ddd6dcac..0e73bad9 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -61,7 +61,7 @@ ssdtools - 0.0.1.9003 + 0.0.2

diff --git a/docs/index.html b/docs/index.html index e4ab8396..77a9da23 100644 --- a/docs/index.html +++ b/docs/index.html @@ -31,7 +31,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 @@ -155,7 +155,7 @@

#> # A tibble: 1 x 5 #> percent est se lcl ucl #> <int> <dbl> <dbl> <dbl> <dbl> -#> 1 5 1.25 0.744 0.617 3.23 +#> 1 5 1.25 0.710 0.597 3.13

Model-averaged predictions complete with confidence intervals can be produced using the stats generic predict

and plotted together with the original data using ssd_plot.

@@ -173,7 +173,7 @@

To cite package 'ssdtools' in publications use: Joe Thorley and Carl Schwarz (2018). ssdtools: Species - Sensitivity Distributions. R package version 0.0.1.9002. + Sensitivity Distributions. R package version 0.0.1.9003. https://github.com/bcgov/ssdca A BibTeX entry for LaTeX users is @@ -182,7 +182,7 @@

title = {ssdtools: Species Sensitivity Distributions}, author = {Joe Thorley and Carl Schwarz}, year = {2018}, - note = {R package version 0.0.1.9002}, + note = {R package version 0.0.1.9003}, url = {https://github.com/bcgov/ssdca}, } diff --git a/docs/news/index.html b/docs/news/index.html index f141a63f..0e878c3d 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -61,7 +61,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 @@ -116,6 +116,14 @@

Changelog

Source: NEWS.md +
+

+ssdtools 0.0.2

+
    +
  • Added contributors
    • +
  • Added hex
    • +
+

ssdtools 0.0.1

@@ -129,6 +137,7 @@

Contents

diff --git a/docs/reference/autoplot.fitdist.html b/docs/reference/autoplot.fitdist.html index 685458a4..3f09feed 100644 --- a/docs/reference/autoplot.fitdist.html +++ b/docs/reference/autoplot.fitdist.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2

diff --git a/docs/reference/autoplot.fitdistcens.html b/docs/reference/autoplot.fitdistcens.html index 6cb211a6..5eff75a7 100644 --- a/docs/reference/autoplot.fitdistcens.html +++ b/docs/reference/autoplot.fitdistcens.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/autoplot.fitdists.html b/docs/reference/autoplot.fitdists.html index 7ff7bb5f..774716ce 100644 --- a/docs/reference/autoplot.fitdists.html +++ b/docs/reference/autoplot.fitdists.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/autoplot.fitdistscens.html b/docs/reference/autoplot.fitdistscens.html index eda85ee4..700a3b8d 100644 --- a/docs/reference/autoplot.fitdistscens.html +++ b/docs/reference/autoplot.fitdistscens.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/boron_data.html b/docs/reference/boron_data.html index 0fb4a769..c8be5363 100644 --- a/docs/reference/boron_data.html +++ b/docs/reference/boron_data.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/boron_dists.html b/docs/reference/boron_dists.html index 0d05f065..e35fb2be 100644 --- a/docs/reference/boron_dists.html +++ b/docs/reference/boron_dists.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/boron_lnorm.html b/docs/reference/boron_lnorm.html index 22720f30..4370ab3d 100644 --- a/docs/reference/boron_lnorm.html +++ b/docs/reference/boron_lnorm.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/boron_pred.html b/docs/reference/boron_pred.html index 0af1b99e..855a83f9 100644 --- a/docs/reference/boron_pred.html +++ b/docs/reference/boron_pred.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/ccme_data.html b/docs/reference/ccme_data.html index ca3d1ad3..8f4b994b 100644 --- a/docs/reference/ccme_data.html +++ b/docs/reference/ccme_data.html @@ -66,7 +66,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/comma_signif.html b/docs/reference/comma_signif.html index ce16059e..891bad12 100644 --- a/docs/reference/comma_signif.html +++ b/docs/reference/comma_signif.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/fluazinam_dists.html b/docs/reference/fluazinam_dists.html index e2aff15c..d9ac55c3 100644 --- a/docs/reference/fluazinam_dists.html +++ b/docs/reference/fluazinam_dists.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/fluazinam_lnorm.html b/docs/reference/fluazinam_lnorm.html index 6a2751f7..eff6adc8 100644 --- a/docs/reference/fluazinam_lnorm.html +++ b/docs/reference/fluazinam_lnorm.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/fluazinam_pred.html b/docs/reference/fluazinam_pred.html index 5e8b9fbe..e2950275 100644 --- a/docs/reference/fluazinam_pred.html +++ b/docs/reference/fluazinam_pred.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/geom_hcintersect.html b/docs/reference/geom_hcintersect.html index 157f4255..4d881370 100644 --- a/docs/reference/geom_hcintersect.html +++ b/docs/reference/geom_hcintersect.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/geom_ssd.html b/docs/reference/geom_ssd.html index 05fc2a51..ac5defa7 100644 --- a/docs/reference/geom_ssd.html +++ b/docs/reference/geom_ssd.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/geom_xribbon.html b/docs/reference/geom_xribbon.html index c65915ef..b8b90363 100644 --- a/docs/reference/geom_xribbon.html +++ b/docs/reference/geom_xribbon.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/index.html b/docs/reference/index.html index 3ea0cbc1..7b0f1f95 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -61,7 +61,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/is.fitdist.html b/docs/reference/is.fitdist.html index f50d22e9..a700f99d 100644 --- a/docs/reference/is.fitdist.html +++ b/docs/reference/is.fitdist.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/is.fitdistcens.html b/docs/reference/is.fitdistcens.html index e38c71ce..93d221e5 100644 --- a/docs/reference/is.fitdistcens.html +++ b/docs/reference/is.fitdistcens.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/is.fitdists.html b/docs/reference/is.fitdists.html index 0662d57a..fc9d411f 100644 --- a/docs/reference/is.fitdists.html +++ b/docs/reference/is.fitdists.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/is.fitdistscens.html b/docs/reference/is.fitdistscens.html index 24f2cb3b..d61360d6 100644 --- a/docs/reference/is.fitdistscens.html +++ b/docs/reference/is.fitdistscens.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/lgumbel.html b/docs/reference/lgumbel.html index e5abea54..5893a8c5 100644 --- a/docs/reference/lgumbel.html +++ b/docs/reference/lgumbel.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/llog.html b/docs/reference/llog.html index f0b5f0a9..60c5f353 100644 --- a/docs/reference/llog.html +++ b/docs/reference/llog.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/nobs.fitdist.html b/docs/reference/nobs.fitdist.html index 8b48bfe6..3b890c8e 100644 --- a/docs/reference/nobs.fitdist.html +++ b/docs/reference/nobs.fitdist.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/nobs.fitdistcens.html b/docs/reference/nobs.fitdistcens.html index 10653ea9..9c523057 100644 --- a/docs/reference/nobs.fitdistcens.html +++ b/docs/reference/nobs.fitdistcens.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/npars.html b/docs/reference/npars.html index b9c0fe14..b23375f0 100644 --- a/docs/reference/npars.html +++ b/docs/reference/npars.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/predict.fitdist.html b/docs/reference/predict.fitdist.html index ea7f3d75..c7c738cf 100644 --- a/docs/reference/predict.fitdist.html +++ b/docs/reference/predict.fitdist.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/predict.fitdistcens.html b/docs/reference/predict.fitdistcens.html index 5e87c006..22914ae7 100644 --- a/docs/reference/predict.fitdistcens.html +++ b/docs/reference/predict.fitdistcens.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 @@ -156,11 +156,9 @@

Arg

Examples

- 
predict(fluazinam_lnorm, percent = c(5L, 50L))
#> # A tibble: 2 x 5
-#>   percent    est     se    lcl   ucl
-#>     <int>  <dbl>  <dbl>  <dbl> <dbl>
-#> 1       5   1.74   5.70  0.353  17.8
-#> 2      50 145.   238.   37.0   848.
+ 
# NOT RUN {
+predict(fluazinam_lnorm, percent = c(5L, 50L))
+# }
diff --git a/docs/reference/predict.fitdistscens.html b/docs/reference/predict.fitdistscens.html index 3f412215..fb1d9dd5 100644 --- a/docs/reference/predict.fitdistscens.html +++ b/docs/reference/predict.fitdistscens.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/ssd_cfplot-1.png b/docs/reference/ssd_cfplot-1.png index cedba7cf..1e9bc724 100644 Binary files a/docs/reference/ssd_cfplot-1.png and b/docs/reference/ssd_cfplot-1.png differ diff --git a/docs/reference/ssd_cfplot.html b/docs/reference/ssd_cfplot.html index d7a01f93..f923c3ce 100644 --- a/docs/reference/ssd_cfplot.html +++ b/docs/reference/ssd_cfplot.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/ssd_ecd.html b/docs/reference/ssd_ecd.html index e3aa1284..3f0b927e 100644 --- a/docs/reference/ssd_ecd.html +++ b/docs/reference/ssd_ecd.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/ssd_fit_dist.html b/docs/reference/ssd_fit_dist.html index 19c645ca..6fa1f150 100644 --- a/docs/reference/ssd_fit_dist.html +++ b/docs/reference/ssd_fit_dist.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/ssd_fit_dists.html b/docs/reference/ssd_fit_dists.html index a963c1ce..e27399eb 100644 --- a/docs/reference/ssd_fit_dists.html +++ b/docs/reference/ssd_fit_dists.html @@ -63,7 +63,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 @@ -197,9 +197,9 @@

Examp #> scale 2.6261311 0.2482597 #> Fitting of the distribution ' gompertz ' by maximum likelihood #> Parameters: -#> estimate Std. Error -#> shape 0.039412737 0.01195845 -#> scale 0.002598026 0.00995729 +#> estimate Std. Error +#> shape 0.039409038 0.011957924 +#> scale 0.002603172 0.009957045 #> Fitting of the distribution ' lgumbel ' by maximum likelihood #> Parameters: #> estimate Std. Error diff --git a/docs/reference/ssd_gof.html b/docs/reference/ssd_gof.html index b6bb9bbe..34ced870 100644 --- a/docs/reference/ssd_gof.html +++ b/docs/reference/ssd_gof.html @@ -77,7 +77,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 diff --git a/docs/reference/ssd_hc.html b/docs/reference/ssd_hc.html index 51b8757c..c683f664 100644 --- a/docs/reference/ssd_hc.html +++ b/docs/reference/ssd_hc.html @@ -64,7 +64,7 @@ ssdtools - 0.0.1.9003 + 0.0.2 @@ -195,10 +195,9 @@

Examp 
ssd_hc(boron_lnorm)
#> # A tibble: 1 x 5
 #>   percent   est    se   lcl   ucl
 #>     <int> <dbl> <dbl> <dbl> <dbl>
-#> 1       5  1.68 0.696 0.855  3.61
ssd_hc(fluazinam_lnorm)
#> # A tibble: 1 x 5
-#>   percent   est    se   lcl   ucl
-#>     <int> <dbl> <dbl> <dbl> <dbl>
-#> 1       5  1.74  5.47 0.322  16.4
# NOT RUN {
+#> 1       5  1.68 0.711 0.848  3.63# NOT RUN {
+ssd_hc(fluazinam_lnorm)
+# }# NOT RUN {
 ssd_hc(boron_dists)
 # }# NOT RUN {
 ssd_hc(fluazinam_dists)
diff --git a/docs/reference/ssd_plot.html b/docs/reference/ssd_plot.html
index d4942a21..6f68667f 100644
--- a/docs/reference/ssd_plot.html
+++ b/docs/reference/ssd_plot.html
@@ -63,7 +63,7 @@
       
       
         ssdtools
-        0.0.1.9003
+        0.0.2
       
     
 
diff --git a/docs/reference/ssdtools-ggproto.html b/docs/reference/ssdtools-ggproto.html
index 9478f678..5fdc41ca 100644
--- a/docs/reference/ssdtools-ggproto.html
+++ b/docs/reference/ssdtools-ggproto.html
@@ -63,7 +63,7 @@
       
       
         ssdtools
-        0.0.1.9003
+        0.0.2
       
     
 
diff --git a/docs/reference/stat_ssd.html b/docs/reference/stat_ssd.html
index 15659c24..2b438842 100644
--- a/docs/reference/stat_ssd.html
+++ b/docs/reference/stat_ssd.html
@@ -63,7 +63,7 @@
       
       
         ssdtools
-        0.0.1.9003
+        0.0.2
       
     
 
diff --git a/docs/reference/subset.fitdists.html b/docs/reference/subset.fitdists.html
index dde36474..a425189a 100644
--- a/docs/reference/subset.fitdists.html
+++ b/docs/reference/subset.fitdists.html
@@ -63,7 +63,7 @@
       
       
         ssdtools
-        0.0.1.9003
+        0.0.2
       
     
 
diff --git a/man/predict.fitdistcens.Rd b/man/predict.fitdistcens.Rd
index 2126a635..3e0a29e1 100644
--- a/man/predict.fitdistcens.Rd
+++ b/man/predict.fitdistcens.Rd
@@ -22,5 +22,7 @@
 Predict censored fitdist
 }
 \examples{
+\dontrun{
 predict(fluazinam_lnorm, percent = c(5L, 50L))
 }
+}
diff --git a/man/ssd_hc.Rd b/man/ssd_hc.Rd
index 9109d866..4dc5584c 100644
--- a/man/ssd_hc.Rd
+++ b/man/ssd_hc.Rd
@@ -56,7 +56,9 @@ at which by default 5\% of the species are affected.
 
 \examples{
 ssd_hc(boron_lnorm)
+\dontrun{
 ssd_hc(fluazinam_lnorm)
+}
 \dontrun{
 ssd_hc(boron_dists)
 }
diff --git a/vignettes/ssdca.Rmd b/vignettes/ssdca.Rmd
index 3dd08fa3..96941756 100644
--- a/vignettes/ssdca.Rmd
+++ b/vignettes/ssdca.Rmd
@@ -4,7 +4,7 @@ author: "Joe Thorley"
 date: "`r Sys.Date()`"
 output: rmarkdown::html_vignette
 vignette: >
- %\VignetteIndexEntry{Vignette Title}
+ %\VignetteIndexEntry{Introduction to ssdtools}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteEncoding{UTF-8}
 ---